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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAAACGTAAGGTTGTGAAACGTAGCAAGCTTGAGAAGGACAGAGAGTTGTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAGgttagtttttaacttgaatatgtgatcattgtacagttgaattcaatgagtgcatgcctccctttgtgattatcctttgtatcttcaccgacaaaacatg...

Basic information

species Zea mays
transcript GRMZM2G015730_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015730_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 3
CCGAAACGTAAGGTTGTGAAACGTAGCAAGCTTGAGAAGGACAGAGAGTTGTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAGgttagtttttaacttgaatatgtgatcattgtacagtt-----gaattcaatg-agtgcatgcctccctttgtgattatcctttgtatcttcaccgacaaaacatg
| ||| || ||||| ||||||   |||||| | ||||||||||||||| |||||||||| || |||   |||||||| || || ||||| |||||||||||  || || || | ||   |  |      ||  | |||      ||||||||| |||||||   |||||| ||||||  |  |   || || || |  ||||    
CAGAAGCGCAAGGTCGTGAAAAAGAGCAAGGTAGAGAAGGACAGAGAGCTGTTTGAACTTGCGCAGGCGTACCACAAGGTGGTAGCAGAGAGGGATGCAGgcaagcttctatcatgtgaacttatgggctgacctgtttccaataattcaatgtagtgcatagatcccttggtgatt--cactcagatttttactgttaaaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211509239|gb|FL291293.1|FL291293
EST:     GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAG                         GAATAAGGCTGACGCCGGCGC
genomic: GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAGgttagttttt ... aacgagacagGAATAAGGCTGACGCCGGCGC