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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttccaatatttttggtcgtgttcttacaattgaagaacaaggctgtgttatcttgtttgcaaaataatttctgaacctcatttttttattctatt...

Basic information

species Zea mays
transcript GRMZM2G015642_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015642_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 2
CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttccaatatttttggtcgtgttcttacaattgaagaacaaggctgtgt-tatcttgtttgcaaaataatttctgaacctcatttttttattctatt-
  || |  ||||||||||| ||| ||| ||||||||||||||| ||||||||||| ||||||||||| | | | ||||||||||||| || |  | |   |  |    | |  | |  ||           ||||| | |||   |     | | |    |  |  |  | |||||  |  ||| 
TTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAGgtaattttctgtttcaatcattcaatgcccatatatggttcctttttatgtgtgtttctcactccttcagtgacagtt--attttttatttttgatggatta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32843365|gb|CD983046.1|CD983046
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71308849|gb|DR790674.1|DR790674
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|74245854|gb|DT653768.1|DT653768
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350390|gb|FL140681.1|FL140681
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTNCA-TGGAAGAAAA
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTT-CAATGGAAGAAAA
EST: gi|71428602|gb|DR809652.1|DR809652
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|89252836|gb|DY624622.1|DY624622
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350383|gb|FL140674.1|FL140674
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350386|gb|FL140677.1|FL140677
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|78108643|gb|DV527061.1|DV527061
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71764914|gb|DR962851.1|DR962851
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|32843363|gb|CD983044.1|CD983044
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|33099325|gb|CF059285.1|CF059285
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|76015966|gb|DT943136.1|DT943136
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71312732|gb|DR792898.1|DR792898
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350395|gb|FL140686.1|FL140686
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAAACACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAA-C
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|32864563|gb|CF004245.1|CF004245
EST:     GCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: GCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211352796|gb|FL140690.1|FL140690
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|50331665|gb|CO526791.1|CO526791
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|94476999|gb|EB705957.1|EB705957
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|91054431|gb|EB164849.1|EB164849
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|31354626|gb|CD438983.1|CD438983
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|32843520|gb|CD983201.1|CD983201
EST:     TAGTG-TATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71757403|gb|DR955340.1|DR955340
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350387|gb|FL140678.1|FL140678
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTC
EST: gi|33099323|gb|CF059283.1|CF059283
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71313717|gb|DR793448.1|DR793448
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|74245303|gb|DT653217.1|DT653217
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|78076004|gb|DV504438.1|DV504438
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211352793|gb|FL140687.1|FL140687
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350385|gb|FL140676.1|FL140676
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTTGACTTCAATGGAAGAAA
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGT-GACTTCAATGGAAGAAA
EST: gi|149082785|gb|EE172007.2|EE172007
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|78111329|gb|DV529726.1|DV529726
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|31355278|gb|CD439635.1|CD439635
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|31361274|gb|CD445631.1|CD445631
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|101399753|gb|EB821723.1|EB821723
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|76287924|gb|DV027492.1|DV027492
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|32913988|gb|CF018800.1|CF018800
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350384|gb|FL140675.1|FL140675
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCA
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCA
EST: gi|32843254|gb|CD982935.1|CD982935
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGTAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|71437117|gb|DR818167.1|DR818167
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|211350394|gb|FL140685.1|FL140685
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
EST: gi|32843310|gb|CD982991.1|CD982991
EST:     TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAG                         CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC
genomic: TAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 192

CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 162

CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 138

CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 133

CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttcca ... tgcttgccagCTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCTTATCTGAAATCCTCTAAACCAAGCACCATAGTGCTATCCGGGCTCAGTGGCAGTGGCAAAACCACTATTTTCTACCAGgtaacttccaatatttttggtcgtgttcttacaattgaagaacaaggctgtgttatcttgtttgcaaaataatttctgaacctcatttttttattctatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaataa