1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGAGAGAGCAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgctcatgatacaatcttgtatggttttcatgatgcactgcaagaaactcactactcttcccttagtttgcatttcatattaccaatttgcaac...
species | Zea mays |
transcript | GRMZM2G015344_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|89251363|gb|DY623149.1|DY623149
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|211057429|gb|FL062177.1|FL062177
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCC-GTGTTGCTGATTTCGTTCAEST: gi|71318567|gb|DR796043.1|DR796043
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCA
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|71449461|gb|DR830511.1|DR830511
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|51871130|gb|CV126014.1|CV126014
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGACACCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTTGTTCATGGGTCAGACGGCATTGGGEST: gi|76935894|gb|DV174515.1|DV174515
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|32803180|gb|CD955416.1|CD955416
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|71438819|gb|DR819869.1|DR819869
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|78105410|gb|DV523828.1|DV523828
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|94473161|gb|EB702119.1|EB702119
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|149077634|gb|EE166336.2|EE166336
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|76290576|gb|DV030144.1|DV030144
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|211054466|gb|FL062172.1|FL062172
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTCGGEST: gi|211057438|gb|FL062186.1|FL062186
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGAEST: gi|71439185|gb|DR820235.1|DR820235
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGA
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGGEST: gi|211057431|gb|FL062179.1|FL062179
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
EST: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAG GGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
genomic: CAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgct ... tgttcattagGGAGGAAAGCCCCGTGTTGCTGATTTCGTTCATGGGTCAGATGGCATTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGAGAGAGCAGGATGCCCTGAAGTTCCAGTAGCAGAGGGCAGCCATGAGCCCCTAAAGgttgtttgctcatgatacaatcttgtatggttttcatgatgcactgcaagaaactcactactcttcccttagtttgcatttcatattaccaatttgcaac
- - - - - AGGATG
- - - - - - - - - CTGAAG