1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATTTGTTTTATCTCATCTTTCTAAAAAGTTCGAACTACCTGACAGTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttgggacccttctgcatatattttctgaactttaatttctacatgaaaattagtaaaatagctataaacacgtttttttgttgatgttggccg...
species | Zea mays |
transcript | GRMZM2G015324_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|78116066|gb|DV534454.1|DV534454
genomic: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: ATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|113703680|gb|EE681184.1|EE681184
genomic: ATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: GCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|28985958|gb|CB350899.1|CB350899
genomic: GCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: TTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|87155086|gb|DY399875.1|DY399875
genomic: TTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTGTTTTATCTCATCTTTCTAAAAAGTTCGAACTACCTGACAGTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttgggacccttctgcatatattttctgaactttaatttctacatgaaaattagtaaaatagctataaacacgtttttttgttgatgttggccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG