1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGAATTCCAGTTAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCTAATCGGgtatgcatctgcttgacaaccatactcatttgaacttcatcactactatattgtgctttgagaactattgtcatcagttaaatttacatgaaactggcctcag
species | Zea mays |
transcript | GRMZM2G015324_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCTAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACEST: gi|6102042|gb|AW126512.1|AW126512
genomic: AGTTAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCTAATCGGgtatgcatct ... ctggcctcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGAC
EST: ATCTTTTCGCTAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACEST: gi|67024253|gb|CO453002.1|CO453002
genomic: ATCTTTTCGCTAATCGGgtatgcatct ... ctggcctcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGAC
EST: AGTTAGCATTATTTAAGAATCAGAGGAAA-CAAATCTTTTCGCTAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGAC
genomic: AGTTAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCTAATCGGgtatgcatct ... ctggcctcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAATTCCAGTTAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCTAATCGGgtatgcatctgcttgacaaccatactcatttgaacttcatcactactatattgtgctttgagaactattgtcatcagttaaatttacatgaaactggcctcag
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAA