Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTACATATAAAAACGTTGTTGGGTCCAATTCATCTCTGTGCATCCCGTGTTCTGTGGATAGTCTTCCAAACCGTGCTGAATTCATATATATAAGAGgtaggtccttaacttgcctagtgatttatagtatatcattgttgtttccttcaatatccttaatgttgactgctagaaaccatcattaattttgactcttgctag

Basic information

species Zea mays
transcript GRMZM2G015291_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015291_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 5'ss of exon 13
GTTGGTACATATAAAAACGTTGTTGGGTCCAATTCATCTCTGTGCATCCCGTGTTCTGTGGATAGTCTTCCAAACCGTGCTGAATTCATATATATAAGAGgtaggtccttaac------ttgcctagt---gatttatagt-atatcattgttgtttc-cttcaatatccttaatgttgactgctagaaacca-tcattaattttgactcttgctag
 | |||||||| ||||| |||||||||||| ||||||||||||| || || |||||| ||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||         | | ||  |   ||  |||| | || | ||||   | |  || ||| ||   | ||||| | |   |||||| |  |||||| |||    | ||||||
ATCGGTACATACAAAAATGTTGTTGGGTCCGATTCATCTCTGTGTATGCCTTGTTCTCTGGATAGTCTTCCTAACCGCGCTGACTTCATATATGTAAGAGgtaggtccttggaaagacatggtcttatgtggaactataattatttaattgccttgtaactccaaaatttatgatgttaaattggagaaactaaccattaactttt-tacatgctag