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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatatttatcagcatgtacataaagatgggaatacttccatgatgcgattgtacatataatccagcaattcattcgaaaaaaccaaaagcgtatttt...

Basic information

species Zea mays
transcript GRMZM2G014695_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211490038|gb|FL024041.1|FL024041
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211487163|gb|FL024035.1|FL024035
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211492924|gb|FL024053.1|FL024053
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|32922594|gb|CF027406.1|CF027406
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211492932|gb|FL024061.1|FL024061
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211487162|gb|FL024034.1|FL024034
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211490037|gb|FL024040.1|FL024040
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211490043|gb|FL024046.1|FL024046
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211492930|gb|FL024059.1|FL024059
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211490039|gb|FL024042.1|FL024042
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|71431596|gb|DR812646.1|DR812646
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|37420070|gb|CF647721.1|CF647721
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|149105340|gb|EE290837.2|EE290837
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211495812|gb|FL024068.1|FL024068
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGCGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: gi|211492927|gb|FL024056.1|FL024056
EST:     CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG                         AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatatttatcagcatgtacataaagatgggaatacttccatgatgcgattgtacatataatccagcaattcattcgaaaaaaccaaaagcgtatttt

- - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA