1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCAGGAGTGGCGGTGTGCACCGTCACTGACGTGAGCGTCAACGCCAGAGGCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgttagtcggtctgctagctgcgctcttgttctggaactgatcgttttgtgttgctgctgcag
species | Zea mays |
transcript | GRMZM2G014610_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTAT TATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTTCAGCCTGCTGEST: gi|148947409|gb|EC892824.2|EC892824
genomic: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgtt ... gctgctgcagTATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTTCAGCCTGCTG
EST: GCCTGNTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTAT TATGTTCATTTCCTCCAGCGCAAGCACTCTCTCATCTCGTTCAGCEST: gi|148950842|gb|EC896458.2|EC896458
genomic: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgtt ... gctgctgcagTATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTTCAGC
EST: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTAT TATGTTCATTTCCTCCAGCGCAAGCACTCTCTNCA-CTCGTTCAGCCTGCTEST: gi|110210926|gb|EC892823.1|EC892823
genomic: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgtt ... gctgctgcagTATGTTCATTTCCTCCAGCGCAAGCACTCTCT-CAACTCGTTCAGCCTGCT
EST: TGGTCGCGGCCGTCGTGGCTGTCGGGAGCACGGCTCTGCAGCAGTAT TATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTTCAGCCTGCTGEST: gi|148971020|gb|EE021853.2|EE021853
genomic: TGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgtt ... gctgctgcagTATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTTCAGCCTGCTG
EST: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTAT TATGTTCATTTCCTCCAGCGCAAGCACTCTCTCCACTCGTTTCAGC-TGCT
genomic: GCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgtt ... gctgctgcagTATGTTCATTTCCTCCAGCGCAAGCACTCTCTCAACTCGTT-CAGCCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAGGAGTGGCGGTGTGCACCGTCACTGACGTGAGCGTCAACGCCAGAGGCCTGGTCGCGGCCGTCGTGGCTGTCTGGAGCACGGCTCTGCAGCAGTATgtaagttgttagtcggtctgctagctgcgctcttgttctggaactgatcgttttgtgttgctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG