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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGAATCTGTCAGGAAACGTGCTTGGATATTATCCTGTCAATGTTCTACCATCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag

Basic information

species Zea mays
transcript GRMZM2G014573_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGAATCTGTCAGGAAACGTGCTTGGATATTATCCTGTCAATGTTCTACCATCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctccag
|||||| ||| |||| |||| |||||||||||||||||||||||  || || |||||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   |    ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag

upper sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTGAATCTGTCAGGAAACGTGCTTGGATATTATCCTGTCAATGTTCTACCATCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag
|||| |||  ||||| || | | ||||||||||||| ||  | |  || ||||| ||||||||||||||||||||||||||   ||||||  | |||||||||        || | |   ||  |||| | |   | ||  |    | | ||||  |||  |  |      ||| |  |||      ||  |     | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag