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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcacaacttgctaaagatttccatgcccttttgcag

Basic information

species Zea mays
transcript GRMZM2G014136_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaa----------ttaagaaaatgtgtgcatctgcactctgcattcagtcacaacttgctaaagatttccatgcccttttgcag
||| || ||| | || |||||||||    |||||||||||||  | ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| ||           ||||  || || || |||||   || |  |||  || |  |||| ||   | | |   || |||||| |||
AATTGAGACAGTGGCTACTTATGATATTAAAACAAGAGAGTTTGTGATAAATACTCCTTGTGAATCAGCCCAGAAGTACTGGATTGGTGGAGCTGCTAATgtatgatgaaatttcacttaaataattgagtacatctatgctgtctatttggttattacttactgttggtgtttgtggccttttacag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcaca-acttgctaaagatttccatgccc-ttttgcag----------------------------------------------------
||| |||||| |  | |||||||||||| | ||  | || ||  |||| ||||||||||||||||| | ||||||||| ||||||||||| || || |||||||  |||       | ||| ||  ||     ||  |  | ||  | || || |||   |        || |||| ||                                                     
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttt-----tttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcaca-acttgctaaagatttcca--tgccct---tttgcag-----------------------------------
||| |||||| |  | |||||||||||| | ||  |||| ||  |||| ||||| ||||||||||| | ||||||||| ||||||||||| || || |||||||  |||       | |||  |  ||     ||  |  | ||  | || || |||   ||| ||  ||| |    |||| |                                    
AATTGAAACAGTCACTACTTATGATTCAAACACCGGAGAATTTGTCATCAATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATgtaatgatttt-----tttgtatacttgataattgtttaaaatcctagacatgataacatttttcaactgctccaactttgtatatattaaccttatattaacttgttcttttattcag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcac-aacttgctaaagatttccatgcccttttgcag
||| |||||| |  | ||||||||  ||  |||   ||||||  | ||||||||||| |||||||| ||||||||||| ||||| ||||  || || || ||||| | | |  |    |   |  |  |||||  |    |   ||  ||||| | |  ||      |   ||  |   
AATTGAAACAGTGACTACTTATGACCCAACAACTGAAGAGTTTGTGATAAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATCGGTGAGGCAGCTAACgtaagtagtcactatgctta-actcccacactcatctgctatctactgacttgttgat-atactttggttgttcag---

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaag-------aaaatgtgtgcatctgcac-----tctgcattcagtcacaacttgctaaagatttccatgccc-ttttgcag-------------------
||| |||||| |  ||||||||||  || ||||   ||||||  | ||||||||||| |||||||| ||||||||||| ||||||||||| || || |||||||| | | |        |   || ||| | ||  |      | |  ||| |||  || | | || |    |   || |   |||||                      
AATTGAAACAGTGACAACTTATGACCCAAAAACTGAAGAGTTTGTGATAAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATTGGTGGGGCAGCTAATgtaagtagtcattgtccctatcctgagtgtacctaaatacttgtttctatttagtt-caccctcctgatttgtcatatactaattttgtgatatacttttggttgttcag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcac-aacttgctaaagatttccatgcccttttgcag------------------------------------------------------
 || |||||| |  | || ||||| ||| ||||  |||||||  | || || | ||| |||||||||||||||||||||||||| || ||||| || |||||||| | |      ||   |   |||    | |   | |  |  | || ||||  |   | |   ||   ||||   |                                                      
TATTGAAACAGTTACCACATATGACTCAAAAACTGGAGAGTTTGTTATTAACAGTCCCTGTGAATCAGCTCAGAAGTACTGGATAGGAGGAGCAGCAAATgtaaggaatttttctattactttttctttgttgtttttccttttgctaatttgc--acactctatctgttgttttaatggttcctacttcagcttcaattctgtactgacatgttttttgtaacattgtttag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S37_122V6.1 (Physcomitrella patens), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgc--attcagt-cac-----aacttgctaaagatttccatgcccttttgcag-------------------------------------------
 || |||||  |  | || |||||| |    |||   ||||| |||||  | ||||| || ||||| |||||||||||||||||||| ||||||||  | ||||   | |  |   | |||     || | | ||   |||| || | |     || ||  | || ||  | ||    |||||||                                            
CATTGAAACTGTTACTACCTATGATCCTTCTACAGAGGAGTTTATCATCGACACTCCTTGCGAATCTGCTCAGAAGTACTGGATTGGAGGAGCTGCGCAGgtaactgt-accatgttttgtattgttgaattgtgttaattctgtgcgcttttgaagttttttaatatgccgatcattttttgcaccgtttacatgatccgtgtgctcactttactctgtcattggcag

upper sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S149_61V6.1 (Physcomitrella patens), 5'ss of exon 3
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcacaacttgctaaagatttccatgcccttttgcag------------------------------------------------------------------------
 || |||||| |  | ||||||||| |    |||   |||||||||||  ||||||| |||||||| ||||| |||||||||||||| ||||| ||  | ||||  | ||  |||||||      ||    |  |  ||  ||    |  || |  |  ||         || |  |                                                                         
CATTGAAACAGTGACTACTTATGATACTTCCACAGAGGAGTTCATCATCGATACTCCTTGTGAATCTGCTCAAAAGTACTGGATTGGAGGAGCCGCACAGgtaaatagtagcaaaatgttattgactaggtttagtttttggt-gtgatgtgatgcaagttgtgggcgttttctttaatttcgaggtgttttaattttctattgctcctctattgctctcattttattttatctttgtcgttattggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211531376|gb|FL093845.1|FL093845
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACNATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32922586|gb|CF027398.1|CF027398
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32922930|gb|CF027742.1|CF027742
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCTTCACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534374|gb|FL093854.1|FL093854
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32922923|gb|CF027735.1|CF027735
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|50322995|gb|CO518121.1|CO518121
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534377|gb|FL093857.1|FL093857
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|78118417|gb|DV536803.1|DV536803
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32923030|gb|CF027842.1|CF027842
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531379|gb|FL093848.1|FL093848
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGG-G-AGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAA
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAA-
EST: gi|211534383|gb|FL093863.1|FL093863
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32923258|gb|CF028070.1|CF028070
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534378|gb|FL093858.1|FL093858
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|78122592|gb|DV540976.1|DV540976
EST:     ATACTCCATGTGAATCATCTCAAAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531380|gb|FL093849.1|FL093849
EST:     TACTCCATGTGAATCCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAA
genomic: TACTCCATGTGAATC-AGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAA-
EST: gi|32921855|gb|CF026667.1|CF026667
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32923274|gb|CF028086.1|CF028086
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531373|gb|FL093842.1|FL093842
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32921928|gb|CF026740.1|CF026740
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531377|gb|FL093846.1|FL093846
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531369|gb|FL093838.1|FL093838
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211537384|gb|FL093868.1|FL093868
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32922650|gb|CF027462.1|CF027462
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534380|gb|FL093860.1|FL093860
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211537385|gb|FL093869.1|FL093869
EST:     ATACTCCATGTGAATCAGNTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|32920277|gb|CF025089.1|CF025089
EST:     ACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534371|gb|FL093851.1|FL093851
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211531381|gb|FL093850.1|FL093850
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAA
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAA-
EST: gi|74241999|gb|DT649913.1|DT649913
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
EST: gi|211534385|gb|FL093865.1|FL093865
EST:     ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAAT                         CATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT
genomic: ATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 40

AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAATGAAGGAGTTCATGCTTTTGTAGCTCAAATTAGGGATGAAGATGGAACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 206

AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAATGAAGGAGTTCATGCTTTTGTAGCTCAAATTAGGGATGAAGATGGAACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 258

AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAATGAAGGAGTTCATGCTTTTGTAGCTCAAATTAGGGATGAAGATGGAACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 114

AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaatta ... ccttttgcagCATGCAACACATACAATAGTCTTTTGTCAACTTCATATAAATGGGAGAAATGAAGGAGTTCATGCTTTTGTAGCTCAAATTAGGGATGAAGATGGAACTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcacaacttgctaaagatttccatgcccttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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