Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagattttttccatcttgatgattattccttttataagattcattgtttatatgtgtgtaatctcatagttgttcatctacag

Basic information

species Zea mays
transcript GRMZM2G014116_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014116_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 5'ss of exon 3
TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagattttttccatcttgatgattattccttttataagattcattgt--ttatatgtgtgtaatctcatagttgttcatctacag---
||| ||||||||||||||||||||||||||||| || || |||| ||| |||||| | || |||||||| || ||  |||||||||| |||||||| ||||||||| |  |  |  ||  |  |||  |    | |||||||| | ||   ||  |||||||||||||||  | | | |||| || |   
TGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCAGACATGGACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatcatggctactcaaatattgcttacct-ataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17931575|gb|BM268535.1|BM268535
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31358688|gb|CD443045.1|CD443045
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427058|gb|FL201071.1|FL201071
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427045|gb|FL201058.1|FL201058
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|32942192|gb|CF047011.1|CF047011
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|18166644|gb|BM336483.1|BM336483
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|32919590|gb|CF024402.1|CF024402
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31355001|gb|CD439358.1|CD439358
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|7216589|gb|AW562711.1|AW562711
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31355164|gb|CD439521.1|CD439521
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427059|gb|FL201072.1|FL201072
EST:     ACACAAGCATCGAGCTAATAAAA-CACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAG
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAG
EST: gi|61236504|gb|DN586255.1|DN586255
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31355423|gb|CD439780.1|CD439780
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427052|gb|FL201065.1|FL201065
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGGAAA                         ATCTATGTTGAGATAGAGAGAGCCAGAT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGAT
EST: gi|211429642|gb|FL201079.1|FL201079
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGAT-GATCAAAAGGCTTG
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTG
EST: gi|211424446|gb|FL201052.1|FL201052
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGC
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGC
EST: gi|14202839|gb|BG836516.1|BG836516
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427055|gb|FL201068.1|FL201068
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|6626373|gb|AW257905.1|AW257905
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGNCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427057|gb|FL201070.1|FL201070
EST:     ACACAAGCATCGAGCTAATAAARACACTGAGCAGTGTCTCTGCTGGCAAA                         AATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAAT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagA-TCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAAT
EST: gi|211429638|gb|FL201075.1|FL201075
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|5555401|gb|AI881352.1|AI881352
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211424450|gb|FL201056.1|FL201056
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427053|gb|FL201066.1|FL201066
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAAGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427056|gb|FL201069.1|FL201069
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGA
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGA
EST: gi|18161887|gb|BM331726.1|BM331726
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|18168671|gb|BM338511.1|BM338511
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427046|gb|FL201059.1|FL201059
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|9953978|gb|BE640561.1|BE640561
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31350034|gb|CD434391.1|CD434391
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|213188018|gb|FM188229.1|FM188229
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211429636|gb|FL201073.1|FL201073
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGC
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGC
EST: gi|26457612|gb|CA829195.1|CA829195
EST:     CTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: CTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|108824160|gb|EC278168.1|EC278168
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAAAT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAA-T
EST: gi|71448354|gb|DR829404.1|DR829404
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211429640|gb|FL201077.1|FL201077
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427048|gb|FL201061.1|FL201061
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211429641|gb|FL201078.1|FL201078
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|111991033|gb|EE331916.1|EE331916
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAA-TT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211424449|gb|FL201055.1|FL201055
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31354458|gb|CD438815.1|CD438815
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|31910184|gb|CD651297.1|CD651297
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211429637|gb|FL201074.1|FL201074
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211424448|gb|FL201054.1|FL201054
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
EST: gi|211427049|gb|FL201062.1|FL201062
EST:     ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAA                         ATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT
genomic: ACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 258

TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATTAAAGAGGAGCAGGGACAAATTTACGAGGCTGCTGATTTGATGCAAGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 235

TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATTAAAGAGGAGCAGGGACAAATTTACGAGGCTGCTGATTTGATGCAAGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 245

TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATTAAAGAGGAGCAGGGACAAATTTACGAGGCTGCTGATTTGATGCAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 208

TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagatttt ... tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATTAAAGAGGAGCAGGGACAAATTTACGAGGCTGCTGATTTGATGCAAGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTATGGTTCAGAAAGCAATGGAGTACATTGATTTGACACCAGGCATTGACACAAGCATCGAGCTAATAAAAACACTGAGCAGTGTCTCTGCTGGCAAAgtgagattttttccatcttgatgattattccttttataagattcattgtttatatgtgtgtaatctcatagttgttcatctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG