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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTGGACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAGgtagtggcattattaatgattattaaattttcgtaccacttatttcaaaaccattcatttgaaatgtttcttcctggttcgtgtcatgcag

Basic information

species Zea mays
transcript GRMZM2G013908_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 3
CGTATATGGATTTGCCTCTGGTGATCCATTACGTTTTAAGAGAGCTGTTGGACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAGgtagtggcattattaatgatt--attaaat---tttcgtaccacttatttcaaaaccattcatttgaaatgtttcttcctggttcgtgtcatgcag
 |||||||||||||| || ||||| || || || |||||||||||||| ||||| ||||||||||||||| |||||||  |||||||||||||||||||||||| |||  || |||||  |  || ||||   ||| ||||   || | | | |   ||  ||||||||  ||||||  |  || |     |||||
TGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGgtaggggctctactaatggatgaatcaaataacttttgtacttattttattatagggatcaatttgaaaattttcttattcattggctctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76925484|gb|DV170465.1|DV170465
EST:     GACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAG                         ATTATTGACTGTCCTCTGCCTAAAGCCCCACTGGACACATCAGTTGTAGCC
genomic: GACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAGgtagtggcat ... tgtcatgcagATTATTGACTGTCCTCTGCCTAAAGCCCCACTGGACACATCAGTTGTAGCC
EST: gi|211149894|gb|FL367822.1|FL367822
EST:     GACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAG                         ATTATTGACTGTCCTCTGCCTAAAGCCCCACTGGACACATCAGTTGTAGCC
genomic: GACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAGgtagtggcat ... tgtcatgcagATTATTGACTGTCCTCTGCCTAAAGCCCCACTGGACACATCAGTTGTAGCC
EST: gi|74244039|gb|DT651953.1|DT651953
EST:     AACATAAGGATCTCTTCTATCTTGAGGATCGGGAGGTAGACTTCCAAGAG                         ATTATTTGACT
genomic: GACATAAGGATCTCTTCTATCTTGATGATCGGGAGGTAGACTTCAAAGAGgtagtggcat ... tgtcatgcagATTATT-GACT