Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagttaatactagtgttgagcatgtaaaagctatcttgcaacctaatactaatctttagtcttttgcag

Basic information

species Zea mays
transcript GRMZM2G013600_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211199640|gb|FL066446.1|FL066446
EST:     ACGAA-KATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199633|gb|FL066439.1|FL066439
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199631|gb|FL066437.1|FL066437
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211133103|gb|FL066425.1|FL066425
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCABATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211202196|gb|FL066454.1|FL066454
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211204764|gb|FL066465.1|FL066465
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|149071159|gb|EE159556.2|EE159556
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211133109|gb|FL066431.1|FL066431
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199637|gb|FL066443.1|FL066443
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211306499|gb|FL467490.1|FL467490
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|148979713|gb|EE026786.2|EE026786
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|15426720|gb|BI542542.1|BI542542
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|15426730|gb|BI542552.1|BI542552
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|78107711|gb|DV526129.1|DV526129
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60397946|gb|DN230762.1|DN230762
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60399144|gb|DN231958.1|DN231958
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|32908904|gb|CF013717.1|CF013717
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAGG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|33771068|gb|CF273362.1|CF273362
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|78107710|gb|DV526128.1|DV526128
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211202197|gb|FL066455.1|FL066455
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGNAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|33093143|gb|CF053137.1|CF053137
EST:     ACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|71764952|gb|DR962889.1|DR962889
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|6636953|gb|AW261225.1|AW261225
EST:     ACGAAGTATGAACGTGCACGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211132176|gb|FL066413.1|FL066413
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211133100|gb|FL066422.1|FL066422
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCACATAAG                         CATGAATGCTCCAGCCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|29130382|gb|CB381086.1|CB381086
EST:     ACGAAGTATGAACGTGCGCGCATTCTGGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTGGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211202193|gb|FL066451.1|FL066451
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60347864|gb|DN214837.1|DN214837
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199630|gb|FL066436.1|FL066436
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211131245|gb|FL066397.1|FL066397
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211133104|gb|FL066426.1|FL066426
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60352879|gb|DN219852.1|DN219852
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211204765|gb|FL066466.1|FL066466
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211202206|gb|FL066464.1|FL066464
EST:     ACGAAKTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60350323|gb|DN217296.1|DN217296
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60357727|gb|DN224700.1|DN224700
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|93017559|gb|EB643079.1|EB643079
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211502196|gb|FK951723.1|FK951723
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|60396800|gb|DN229628.1|DN229628
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|149102013|gb|EE287504.2|EE287504
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|74235059|gb|DT642973.1|DT642973
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|84977260|gb|DW475682.1|DW475682
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199639|gb|FL066445.1|FL066445
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|149086215|gb|EE175755.2|EE175755
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211502195|gb|FK951722.1|FK951722
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211202192|gb|FL066450.1|FL066450
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199641|gb|FL066447.1|FL066447
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199629|gb|FL066435.1|FL066435
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|32855906|gb|CD995587.1|CD995587
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCGTGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|6601607|gb|AW256153.1|AW256153
EST:     ACGAAGTATGAACGTGCACGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|15426767|gb|BI542589.1|BI542589
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211132177|gb|FL066414.1|FL066414
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211132173|gb|FL066410.1|FL066410
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211132170|gb|FL066407.1|FL066407
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTACAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211377054|gb|FK951720.1|FK951720
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|33771081|gb|CF272742.1|CF272742
EST:     ACNAAGTATGAACGTGCGCGCATTCTTGGTACNCNAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|149071158|gb|EE159555.2|EE159555
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|37426097|gb|CF650799.1|CF650799
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211199634|gb|FL066440.1|FL066440
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|71764951|gb|DR962888.1|DR962888
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
EST: gi|211377055|gb|FK951721.1|FK951721
EST:     ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAG                         CATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA
genomic: ACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 629

ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 417

ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 427

ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 270

ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagtt ... tcttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAGGAACAGGAAAAGACCAAGCGTGAGCGCAAAACAACAAAATATATGACGAAGTATGAACGTGCGCGCATTCTTGGTACACGAGCCTTGCAGATAAGgttaatagttaatactagtgttgagcatgtaaaagctatcttgcaacctaatactaatctttagtcttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT