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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGTAAGATGTTCCCCATTATTTGCTGAACTTGCAGATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagttccttttgctaattggtgcctttgtgcactgagcttctatgtaatatctactctaacttgttttgaaattttaaatctctttcag

Basic information

species Zea mays
transcript GRMZM2G011518_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 4
TGAAATGTAAGATGTTCCCCATTATTTGCTGAACTTGCAGATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttg--------------tagttccttttgc--taattggtgcct--ttgtgcactgagcttctatgtaatatctactctaacttgttttgaaattttaaatctctttcag
                                        || ||||| |||||||| |||||||||||||| || ||||||||||| || || ||||||||||               || ||  || ||    |    |||  |  || ||||||||  ||   ||   | | | |||||||||  | ||   |  |   | ||||||||
----------------------------------------ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGgtttacatatatgtataaataatttattatgaggcagcaagtgtttgcttctgcactgacatttgttgccttgt-tgctctaacttactgtgtggtaatc--tgtctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60399444|gb|DN232256.1|DN232256
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|78021761|gb|DV490148.1|DV490148
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|76932676|gb|DV173112.1|DV173112
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|166598077|gb|EG306730.1|EG306730
EST:     CCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: CCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|60394445|gb|DN227315.1|DN227315
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT