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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcactatctttggttggactttctggtttgcgtctcgggtggttgaattggttttatgatgacccttggctgactagaagctgtatcaaccaacgg...

Basic information

species Zea mays
transcript GRMZM2G011173_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ11747 (Selaginella moellendorffii), 5'ss of exon 3
GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcactatctttggttggactttctggtttgcgtctcgggtggttgaattggttttat--gatgacccttggctgactagaagctgtatcaaccaacgg
|     ||||||||| ||||||||||||||||||||  |  | | ||| |||| |    ||      ||   || | || ||| | |    | |     | |     ||    |||     ||| |    | |   ||||  |   ||    
GCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGGAGCACAGgtaagagtgattgcaactttctctctttgtttttcttagacgctaaaaaactcttccttgctggatttgttttgacgcgttggtgactgtgcctgtcag---

upper sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ22541 (Selaginella moellendorffii), 5'ss of exon 3
GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcactatctttggttggactttctggtt-tgcgtctcgggtggttgaa---ttggttttat--gatgacccttggctgactagaagctgtatcaaccaacgg
|     ||||||||| ||||||||||||||||||||  |  | | ||| |||| |    ||      |    || |||  || |   |||  |  | |  ||   | |   ||    |||     ||| |    | |    |||  |   ||    
GCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGAAGCACAGgtaagagtgattgcaactctctctctctctttgtttttcttagacgctaaaaaactcgtccttgctggatttgttttgacgcgttggtgattgtgcctgtcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050350|gb|EB160768.1|EB160768
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|19436293|gb|BM952703.1|BM952703
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTCCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|89248124|gb|DY619910.1|DY619910
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|71419808|gb|DR804903.1|DR804903
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|71435432|gb|DR816482.1|DR816482
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|71320866|gb|DR797150.1|DR797150
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|76013659|gb|DT940829.1|DT940829
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|71313019|gb|DR793034.1|DR793034
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|211502577|gb|FL311927.1|FL311927
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|211145073|gb|FL314893.1|FL314893
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|67034610|gb|CO463160.1|CO463160
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|78091120|gb|DV519494.1|DV519494
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|74241849|gb|DT649763.1|DT649763
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|93016793|gb|EB642313.1|EB642313
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|71768256|gb|DR966193.1|DR966193
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|94477701|gb|EB706659.1|EB706659
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|101382184|gb|EB813148.1|EB813148
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: gi|87153649|gb|DY398438.1|DY398438
EST:     GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTCCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC