1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcctacacacccaatatttttacttcaaatcttccataaaaacatcaattttaaagtagtatagctgttttttttttgaatggcaatccctgc...
species | Zea mays |
transcript | GRMZM2G010823_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|148999094|gb|EE030327.2|EE030327
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324568|gb|FL223785.1|FL223785
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324561|gb|FL223778.1|FL223778
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324560|gb|FL223777.1|FL223777
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|78111379|gb|DV529776.1|DV529776
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324571|gb|FL223788.1|FL223788
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|149089384|gb|EE178623.2|EE178623
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|149001505|gb|EE038811.2|EE038811
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326730|gb|FL223797.1|FL223797
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324562|gb|FL223779.1|FL223779
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTGATTGCAAATAAGGCATCTGAGATCCTTGGGACACA-GCGCGGTGGAGAEST: gi|211326731|gb|FL223798.1|FL223798
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGG-ACACAAGCGCGGTG-AGA
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324574|gb|FL223791.1|FL223791
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGNGAGAAGEST: gi|148951891|gb|EC897665.2|EC897665
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324567|gb|FL223784.1|FL223784
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: NTATCTGGCNAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326725|gb|FL223792.1|FL223792
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324570|gb|FL223787.1|FL223787
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324573|gb|FL223790.1|FL223790
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGNAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324572|gb|FL223789.1|FL223789
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324569|gb|FL223786.1|FL223786
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326733|gb|FL223800.1|FL223800
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|91877250|gb|EB407207.1|EB407207
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326737|gb|FL223804.1|FL223804
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211324565|gb|FL223782.1|FL223782
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326729|gb|FL223796.1|FL223796
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAG GTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGEST: gi|211326736|gb|FL223803.1|FL223803
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAG
EST: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCNATGAG GTNATTGCAAATAGGGGCATCTGAAATCCTTGGACACAAGCCGCGGGTGAG
genomic: TTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcc ... ccgaattcagGTAATTGCAAATAGGG-CATCTGAGATCCTTGGACACAAGC-GCGG-TGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcctacacacccaatatttttacttcaaatcttccataaaaacatcaattttaaagtagtatagctgttttttttttgaatggcaatccctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaacat