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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCTTTGGCCGGCCGATTGCTAGTGCACCAGATGCTTGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttactcttacattgcatcctatagtaatttagcaatcgtctcagcgtggatgtcaacatctaacctggtgcatctttgatgcag

Basic information

species Zea mays
transcript GRMZM2G010202_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 3
GACTGCTTTGGCCGGCCGATTGCTAGTGCACCAGATGCTTGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttactcttacattgcatcctatagtaatttagca----------------atcgtctcagcgtggatgtcaacatctaacctggtgcatctttgatgcag
||||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||||| |||| |||   ||| ||||   || |   |   | ||||||                ||  ||| ||  || |||  |   ||| | |   ||| ||||  ||||||
GACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCAgtatgtatttctcacatctgattcagcacctagttagcataagaaaatgctgaatattatcttaggatgcatgctattctctgatccaatgcttcttcaatgcag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 3
GACTGCTTTGGCCGGCCGATTGCTAGTGCACCAGATGCTTGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgt----tactcttacattgcatcctatagtaatttagcaatcg-tctcagcgtggatgtcaacatctaacctggtgcatctttgatgcag------
||||||||| | || || || || ||    || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||    ||||| |   | | ||   |||  | ||| || |    ||| |   ||  | | |  |   ||   | |   ||||||   ||       
GACTGCTTTTGGCGACCAATAGCCAGCAAGCCGGACGCATGGTTCGATGTGGTTGAGCGCTACTCAAATGACAGCAACAAGACACTCCAgtacgtattatactcctctctcgtataaaatatcacttttgctacaaatctaaagttgttttttataagacaaagagatatgtctttgtcacactatata

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
GACTGCTTTGGCCGGCCGATTGCTAGTGCACCAGATGCTTGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgt-----tactcttacattgcatcctatagtaatttagcaatcgtctcagc---gtggatgtcaacat-ctaacctggtgcatctttgatgcag----------------------------------------------------------------------------------------------------
|| || ||||  || || ||  | |||||||| ||||||||||| |||||||||||||||||||| ||||||  ||||||||| ||  |||| ||     ||||  |   || |   |  ||||  |       | |  || |    | | || | || || || |  |   | ||  ||||| |||                                                                                                    
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaatt--cgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26559603|gb|CA831838.1|CA831838
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|19821837|gb|BQ047861.1|BQ047861
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|22935830|gb|BU572105.1|BU572105
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|87151662|gb|DY396451.1|DY396451
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|20300198|gb|BQ163141.1|BQ163141
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|18964841|gb|BM661241.1|BM661241
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|87152364|gb|DY397153.1|DY397153
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
EST: gi|87156277|gb|DY401066.1|DY401066
EST:     TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCA                         TCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCAAATGACTGCAACAAGACACTCCAgtgtgttact ... tttgatgcagTCGTACCACAGCAACAACCAAATGCCTTAACTTGGGTTCCTATAACTACCT