1 5' 3' | 2 5' 3' | 3 5' 3' |
GACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGAATCCGTCACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaatggacttgggatttccatgtgctcttattacatctctggaatgtttagcacattatagcgtttttgctagtctttttcttttgaaaaaat...
species | Zea mays |
transcript | GRMZM2G009895_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCTAAAAGCACGCGAAGCTCGTCATAGACCCA CTAATGAGAGCCCCAGAAAGCGTGTCATGTTCTACCCAATGGCGGAGTACAEST: gi|78120713|gb|DV539097.1|DV539097
genomic: ACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTTTACACAATGGCGGAGTACAEST: gi|71432889|gb|DR813939.1|DR813939
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACAEST: gi|6194528|gb|AW146632.1|AW146632
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGGGTCATGTTCTACACAATGGEST: gi|211375456|gb|FL445603.1|FL445603
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGG
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACAEST: gi|32943606|gb|CF048425.1|CF048425
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: ACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACAEST: gi|76290829|gb|DV030397.1|DV030397
genomic: ACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACAEST: gi|78023103|gb|DV491490.1|DV491490
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
EST: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACA CTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
genomic: CACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaa ... ttcaatccagCTAATGAGAGCACCAGAAAGCGTGTCATGTTCTACACAATGGCGGAGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGAATCCGTCACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCATAGACACAgtaggctcaatggacttgggatttccatgtgctcttattacatctctggaatgtttagcacattatagcgtttttgctagtctttttcttttgaaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa