Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaacactcatcctgatcaatcacatggctttacttcattttatctcttattaatcagtagcaacttgctatatgtaacatatgctgcag

Basic information

species Zea mays
transcript GRMZM2G009845_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009845_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 5'ss of exon 3
AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaacactcatcctgatcaatcacatggctttacttcatttt--atctcttattaatcagtagcaacttgctatatgtaacatatgctgcag
|||| ||||| |||||||| |||||||||| |||||| || ||||| || || ||||  |||||   |||||||||  |||| ||||||||||| ||  |||| |||   ||||  |    |    |    || | |    | |  ||  |||    || | |    | ||  ||    | |   ||||
AGCGGAGTCCTCCAATTGAGGAGGTGATCAACACAGGGGTGGTGCCTCGCTTTATTGCCTTCCTCCAACGTGAGGATTATCCCCAACTCCAGgtgtgtcaacagtcacagtgatttaatttactaatagtgttaactaggaaccatttgctaaa-gctaaccatcccccatgggt--tttcttgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211002610|gb|FL253498.1|FL253498
EST:     TACCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211005402|gb|FL253522.1|FL253522
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211376202|gb|FL253487.1|FL253487
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211005393|gb|FL253513.1|FL253513
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAA
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTT-GAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAA
EST: gi|9952266|gb|BE638849.1|BE638849
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|148966362|gb|EE017351.2|EE017351
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211376204|gb|FL253489.1|FL253489
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211008169|gb|FL253526.1|FL253526
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|67031523|gb|CO460272.1|CO460272
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211010947|gb|FL253540.1|FL253540
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211002616|gb|FL253504.1|FL253504
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCAC
EST: gi|211005398|gb|FL253518.1|FL253518
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211224828|gb|FL228413.1|FL228413
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211220703|gb|FL228389.1|FL228389
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAA
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTT-GAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAA
EST: gi|211376205|gb|FL253490.1|FL253490
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGAC-ATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCA-AGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|60345381|gb|DN212354.1|DN212354
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAATATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211008171|gb|FL253528.1|FL253528
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211008175|gb|FL253532.1|FL253532
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211376203|gb|FL253488.1|FL253488
EST:     GCCC-GAATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TT-GAGGCTGCATGG
genomic: GCCCCGA-TTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGG
EST: gi|211010949|gb|FL253542.1|FL253542
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211002617|gb|FL253505.1|FL253505
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211010948|gb|FL253541.1|FL253541
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211002621|gb|FL253509.1|FL253509
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCA
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCA
EST: gi|211005396|gb|FL253516.1|FL253516
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211224823|gb|FL228408.1|FL228408
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGA-C
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|74241129|gb|DT649043.1|DT649043
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211224824|gb|FL228409.1|FL228409
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211005392|gb|FL253512.1|FL253512
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211002611|gb|FL253499.1|FL253499
EST:     GCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCCAG                         TTTGAAGCTGCATGGGCGCTCACCAACATTGCATCA
genomic: GCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCC-AGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCA
EST: gi|211220699|gb|FL228385.1|FL228385
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211008181|gb|FL253538.1|FL253538
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|76926668|gb|DV170963.1|DV170963
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211224830|gb|FL228415.1|FL228415
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211376212|gb|FL253497.1|FL253497
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211010951|gb|FL253544.1|FL253544
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211010950|gb|FL253543.1|FL253543
EST:     GCCCCGATTCATTGAGTTCCTTACACGTGAGGGAC-ATCCACAACTCCAG                         TTTGAAGCTGCATGGGCGCTCACCA-CATTGCATCAGGCACATCAGAGA-C
genomic: GCCCCGATTCATTGAGTTCCTTACACGTGAGG-ACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|148991022|gb|EE032463.2|EE032463
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211005397|gb|FL253517.1|FL253517
EST:     GCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCCACA-CTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGA-C
genomic: GCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCC-ACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211224829|gb|FL228414.1|FL228414
EST:     CCCGNATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACNTCCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCA-AGAA
genomic: CCCG-ATTCATTGAGTTCCTTACACGTGAGGACCATCCACAAC-TCC-AGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAA
EST: gi|32849173|gb|CD988854.1|CD988854
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211220697|gb|FL228383.1|FL228383
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211222770|gb|FL228404.1|FL228404
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211002613|gb|FL253501.1|FL253501
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|148994071|gb|EE033948.2|EE033948
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|211222769|gb|FL228403.1|FL228403
EST:     CCCCGATTCATTGAGTTCCTTACACGTGAGGAC-ATCCANCA-CTCCCAG                         TT-GAGGCTGCATGGGCGCTCACCA-CATTGCATCAGG
genomic: CCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCA-CAACTCC-AGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGG
EST: gi|211376207|gb|FL253492.1|FL253492
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|148952930|gb|EE152401.2|EE152401
EST:     TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAG                         TTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: gi|110533381|gb|EE037561.1|EE037561
EST:     CCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCCACAACTCCCG                         TTTGAGGCTGCATGGGCGCTCACCCACATTG
genomic: CCCC-GATTCATTGAGTTCCTTACACGTGAGGACCATCC-ACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 527

AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTTAAGCTCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 509

AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTTAAGCTCC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 625

AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTTAAGCTCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 594

AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGATTCATTGAGTTCCTTACACGTGAGGACCATCCACAACTCCAGgtttgggaac ... tatgctgcagTTTGAGGCTGCATGGGCGCTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTTAAGCTCC