1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCATGGAAATATATATGTGACAGCTGCAAAGAAGATCATGGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatataagtttccatcctccattcaatctttgagctatattactatttaagaagctaatttccataagtttcttagtggtgtagctagttcagta...
species | Zea mays |
transcript | GRMZM2G008647_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCCAGCTTGCAAGCCGATTCTTACEST: gi|26558990|gb|CA831225.1|CA831225
genomic: CACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTAC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|87156320|gb|DY401109.1|DY401109
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|26559048|gb|CA831283.1|CA831283
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|22520845|gb|BU079656.1|BU079656
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|22520856|gb|BU079667.1|BU079667
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|87156605|gb|DY401394.1|DY401394
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTCEST: gi|149045408|gb|EE047831.2|EE047831
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
EST: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG ATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... ttgtgtacagATTCCAAGTTCACACAGCAGGAGTTGCTAGCTTGCAAGCCGATTCTTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGGAAATATATATGTGACAGCTGCAAAGAAGATCATGGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatataagtttccatcctccattcaatctttgagctatattactatttaagaagctaatttccataagtttcttagtggtgtagctagttcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA