1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGAGAAGCGCATATACCTTGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcgcagaatatgttagtttatgaccgcgagtccgcgccttgcttctgttcagctccacatatagataaactcgaacgttggctcatgcgttta...
species | Zea mays |
transcript | GRMZM2G008327_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|17921690|gb|BM259341.1|BM259341
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCATGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|60394106|gb|DN226976.1|DN226976
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: CCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|87152029|gb|DY396818.1|DY396818
genomic: CCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCATGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|76017014|gb|DT944184.1|DT944184
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: GTTCATGGACTCCTGCCCGGAGTTTGGT-AGAAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCACGGGGTTGCGTACTGCCATTCTCATAGAEST: gi|60394498|gb|DN227368.1|DN227368
genomic: GTTCATGGACTCCTGCCCGGAGTTTGCTAAG-AATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: TCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|31362736|gb|CD447093.1|CD447093
genomic: TCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTGCATGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|7216555|gb|AW562677.1|AW562677
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCGTGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|6095562|gb|AW120229.1|AW120229
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG GEST: gi|6095562|gb|AW120229.1|AW120229
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccag-
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG GEST: gi|22489528|gb|BU049451.1|BU049451
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccag-
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCATGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|61118496|gb|DN559457.1|DN559457
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCATGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|93281356|gb|EB673620.1|EB673620
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAG TCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
genomic: AGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcg ... ctttctccagTCATACCTCTACCAGATACTCCACGGTGTTGCGTACTGCCATTCTCATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAAGCGCATATACCTTGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCCTGCCCGGAGTTTGCTAAGAATCCCACTTTGATCAAGgtgagaagcgcagaatatgttagtttatgaccgcgagtccgcgccttgcttctgttcagctccacatatagataaactcgaacgttggctcatgcgttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc