Sequence
atgc intronic sequence ATGC exonic sequenceAGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g24180.1 (Oryza sativa), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
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AGCATTCTTGGACTGGAACCAGGTGCATCAGAGTCTGATATCAAGAAATCATACCGTAGACTTTCTATCCAATACCATCCTGATAAAAATCCTGATCCTGgtaaa--gtttgtctcac-atttttgataatcaatggtgctaaat----aagaaatgtagctgggcttatta----ttattatttttttgttttgaaactttcccag
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
| |||||| ||| | || |||| || | || ||||| || |||||| |||||| ||||||||||||| |||||||| |||||||| || ||||||||| | | | | | || || ||| |||||| | | ||| | || || | || | | | || | | | |
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgc-----aatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta--
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G08830.1 (Glycine max), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactctt-------cttacgccttttctcccacacatacccag----------------
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AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgctaactgatatatttttattccttttattttag
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgt-------acctcatttgt--aacactataataaat----tattaatgttgctcaatgaagaaaaaata-tatcttacc-tggtgaactcttcttacgccttttctcccacacatacccag
| |||||| ||| | || |||| || |||| ||||| || |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||| |||| | | | || | | ||| ||| | || || || || ||| | | | || | ||||| | ||
AATATTCTAGGATTAGAGCCTGGAGCGGCTGAGTCTGAAATAAAGAAAAAGTATAGGAGACTTTCTATTCAATACCATCCAGATAAAAATCCGGATCCAGgttgaaggtgtttcagttgtttagttttcttattgttgcaatgcaaattttgatgtttgcaggaatgtcggcttcctacaattgcctatgtaactgatatattttcattccttttattttag
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgt--acctcatttgtaacact--------ataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
|||| || || ||||| |||| || || || || || ||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| | | || | || ||||| ||||| | | | ||| | ||| | || | | || | || | || | |||
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtttatt--tcctcccttttgatacattgttatgtgtt-cttagtattgcttatttgtgtattgtaatg-gtacag------
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G79940.3 (Arabidopsis thaliana), 5'ss of exon 4
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgta------cctcatttgtaacactataataaattattaat-gttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
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AGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGgtcaagtttttccccttgttattttttttttcccttttgatcattacggaattatggttgcagcttttgatcctgatagttttttcttctatgcgcatttgttgatctctacag
upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 3
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgta-----cctcatttgtaacactataataaattattaatgttgctc--aatgaagaaaaaatatatcttacctgg--tgaactcttcttacgcc---ttttctcccacacatacccag-------------------------
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AGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttctagttcttcagttaatatgtgttccttagttttactttgatttagcaagtactgcgtcttcttttgaatcatctgtgtttactatcaatttctttttgcatttatttatttatctttttttttttgttttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71436007|gb|DR817057.1|DR817057EST: ATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAG AGGCTCATAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAA
genomic: ATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatt ... acatacccagAGGCTCATAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA