ERISdb: a Database of Plant Splice Sites

General
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TCTCGCCCATCGATGGATGAAGTTGTCAAGCAACTCACACCATTACAAGATCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagcacatgaacaaaagtgcccttttaccagtttattatcagggtgcagttctggaagcaccatccaagatgactgagaaagctcattgtttctataaagaattcaagctcactgcagtttactttgtgtaacag

Basic information

species	Zea mays
transcript	GRMZM2G007801_T01
intron #	3
splice site	5'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|29543432|gb|CB603828.1|CB603828

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|40334661|gb|CK368731.1|CK368731

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|71443463|gb|DR824513.1|DR824513

EST:     TTTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTTTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|60395819|gb|DN228689.1|DN228689

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|31997660|gb|CD661702.1|CD661702

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|149003453|gb|EE038922.2|EE038922

EST:     TCTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|149044937|gb|EE047739.2|EE047739

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|211093587|gb|FL440784.1|FL440784

EST:     TCTAAACGACATGGCATCTG-TTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|74236710|gb|DT644624.1|DT644624

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|78121656|gb|DV540040.1|DV540040

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|60355663|gb|DN222636.1|DN222636

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|149088851|gb|EE177982.2|EE177982

EST:     TCTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGGGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|71297800|gb|DR784854.1|DR784854

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|71442165|gb|DR823215.1|DR823215

EST:     TCTAAACGACATGGCATCTGTTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|37379673|gb|CF626583.1|CF626583

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|22473184|gb|BU037664.1|BU037664

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCCGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|24764451|gb|CA399615.1|CA399615

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|32791584|gb|CD943820.1|CD943820

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|78119580|gb|DV537964.1|DV537964

EST:     TTTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

EST: gi|71326007|gb|DR799686.1|DR799686

EST:     TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG                         GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 68

TCTCGCCCATCGATGGATGAAGTTGTCAAGCAACTCACACCATTACAAGATCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTCCTGGTTGCTTGATGCTTGTTTGGTTTAATTGTATAGCAAAATTAGGTG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 250

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 39

Data associated with selected splice site

Sequence

Basic information

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data