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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgcttggtgaactgttgattttgcttgattacaggtggtacctaactggcttttctgttctct...

Basic information

species Zea mays
transcript GRMZM2G007283_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g02830.2 (Oryza sativa), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtc-ctggatgattgcttgcttggtgaactgttgattttgcttgattacaggtggtaccta-actggcttttctgttctct--
|| || || |||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | | | |||||| ||  || ||  |||| || |  | |||   | |    | |||   |||| |||  |  ||  || |   | || ||| |    |  
AATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatccaactccttttcatcacttcatgaatgatatcatggctgaat----agtttctgtgatcacactttttaaatatatatgtttctctctataatgc

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g02810.1 (Oryza sativa), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtc-ctggatgattgcttgcttggtgaactgttgattttgcttgattacaggtggtacctaactggcttttctgttctct----
|| || || |||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | | | |||||| ||  || ||  |||||    | | ||| | | |    | |||   |||| |||  |  ||  ||  |   |||     | |      
AATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatccaactccttttcatcacttcatgatgatat-catggcggaat----agtttctgtgatcacactttttaaatatatatttttctctctataataca

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G45200.1 (Glycine max), 5'ss of exon 3
-AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgctt--ggtgaactgttgattttgcttgattacaggtggtacctaactggcttttctgttctct-
 ||  ||||||||||||| || || |||||||||||||| ||  |||||||||| || ||||||||||||||||| ||  | ||||| ||| | ||||||||||   |  | | |  ||    | ||  |  |    |   ||  |||    | ||| | ||||||  ||   |   | |    | | |  | |  ||  |   
TAATCTGGTGAAGTTGATTGGGTACTGCTGCGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTTCGAGGGAGTTTGGAAAATCACTTGTTCCGAagta---cggcgagttttgccctttctaaacaaaaattcaatttcggttggtt-ttgttcttgctttgtttaggaatggaatggatttggatctaagtgatgag

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G40650.1 (Glycine max), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgcttggt--gaactgttgattttgcttgattacaggtggtacctaactggcttttctgttctct--
||  ||||||||||||| || || || || |||||||| ||  |||||||||| || ||||||||||| ||||| ||  | ||||| ||| ||||||||||||   |  | | |  || |  |     |  | |  ||  |||||  |||   ||| ||| |  ||     |  | | | || |  ||       |||||    
AATCTGGTGAAGTTGATTGGGTACTGTTGTGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTCCGAGGGAGTTTGGAAAATCACTTATTCCGAAgta---cggcgagttttgctcttttgaaacaaattttttgttggtttgaatgtttgctttaggatggaatgaatttggatctgag-ggaagagaggttcttaaa

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgcttggtgaactgttgattttgcttgattacaggtggtacctaactggcttttctgttctct-------
||  ||||||||||||| || ||||| ||||| || || || ||| ||||||| |||||||| ||||| ||||||||||| ||||| ||| | || |||||||       | ||  |   | | |   |||||| ||   ||   |   | ||   || ||  || |  || |||      ||| | || ||| |||  |       
AATCTGGTGAAGTTGATAGGGTATTGTTGCGAGGACGATCACCGGTTGCTTGTGTACGAGTTTATGTTCCGAGGAAGCCTCGAAAATCACTTGTTTCGAAgtacgctccgttctttttgctttgccaaatgattactaatttaa-gcctttttagcttagcccgaatcaagatgg------acttgtttctctattcattgaatgcg

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ22709 (Selaginella moellendorffii), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgcttggtgaactgttgattttgc-ttgattacaggtggtacctaactggcttttctgttctct
||  | || |||||||| || || |||   || || || ||||| || ||||||||||||||||||  ||| || ||||| |||||||| ||||| || |||||      | ||| |  | ||    |||  ||  ||   |   || |    | |   || |||  | ||  |  ||     || | |||          
AATCTCGTAAAGTTGATTGGTTACTGCGCGGAGGACGAGCATCGACTTCTTGTCTACGAGTTCATGCCTCGCGGTAGCCTGGAAAACCATCTATTTCGCAgtaag----ttgctcgtcatagt----gatagttttttctcttacgaccatccgctcacgcgttgtcttcaaattttattgttcttgttttggcag-----

upper sequence: GRMZM2G007283_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ19239 (Selaginella moellendorffii), 5'ss of exon 3
AACTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttctactcctgtttgtcctggatgattgcttgcttggtgaactgttgattt-tgc-ttgattacaggtggtacctaactggcttttctgttctct
||  | || |||||||| || || |||   || || || ||||| || ||||||||||||||||||  ||| || ||||| |||||||| ||||| || |||||            || | |||   ||   ||  ||  |      ||| | |  |   || |||  | ||  |  ||     || | |||          
AATCTCGTAAAGTTGATTGGTTACTGCGCGGAGGACGAGCATCGACTTCTTGTCTACGAGTTCATGCCTCGCGGTAGCCTGGAAAACCATCTATTTCGCAgtaag----------ttgctcgtcacagagagtttttttttcttacgactatcggctcacgcgttgtcttcaaattttattgttcttgttttggcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022281|gb|CO451030.1|CO451030
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGNGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|148957429|gb|EC903492.2|EC903492
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|74234771|gb|DT642685.1|DT642685
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGGACTGGCAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|78081509|gb|DV509921.1|DV509921
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|74234770|gb|DT642684.1|DT642684
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|149102573|gb|EE188233.2|EE188233
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|71437207|gb|DR818257.1|DR818257
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG
EST: gi|71315550|gb|DR794379.1|DR794379
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAA                         AGACAGCTACACCATTACTCTGGGGTACTAGGATGTCAATCGCACTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGCCTAGAAAACCACCTATTCCGAAgtaatacttc ... atgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAG