1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAATGCGGCATTTTAACTGAAGGTGGCATTGCCATAGAAGGCCCAGATTTCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcattagttgtagtactcatctttgcacgctttttttgtatcctggtaggtcattcatcagtgatcactgtgctttgctatggatgtggcag
species | Zea mays |
transcript | GRMZM2G006977_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|211150741|gb|FL082154.1|FL082154
genomic: GATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|211150739|gb|FL082152.1|FL082152
genomic: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|32923223|gb|CF028035.1|CF028035
genomic: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: ATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|32923120|gb|CF027932.1|CF027932
genomic: ATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|211149318|gb|FL082151.1|FL082151
genomic: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTTEST: gi|211150740|gb|FL082153.1|FL082153
genomic: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
EST: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAG GTGATGGCAAGATCTTCGCCACTGGATAAGCATACCCTTGTCAAGCATCTT
genomic: TCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcat ... gatgtggcagGTGATGGCAAGATCTTCACCACTGGATAAGCATACCCTTGTCAAGCATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGCGGCATTTTAACTGAAGGTGGCATTGCCATAGAAGGCCCAGATTTCAGAACCAAGAGTGAAGAAGAGCTTACTCAACTGATACCAAAGATACAGgtgagttcattagttgtagtactcatctttgcacgctttttttgtatcctggtaggtcattcatcagtgatcactgtgctttgctatggatgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT