1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcag
species | Zea mays |
transcript | GRMZM2G006765_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTEST: gi|78117775|gb|DV536162.1|DV536162
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCT
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|71315363|gb|DR794285.1|DR794285
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|32869665|gb|CF009347.1|CF009347
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|6695747|gb|AW288825.1|AW288825
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|32869014|gb|CF008696.1|CF008696
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|32870978|gb|CF010660.1|CF010660
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|101383600|gb|EB813855.1|EB813855
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|60347189|gb|DN214162.1|DN214162
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGEST: gi|78179272|gb|DV549645.1|DV549645
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
EST: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTG GTATTGTATTGGACTCTGGTGATGGTGTCACCCACACAGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc ... catcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA