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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCGAATGAGGGTTTGAGGCTCATATTTTCGGCAGTTATAGGTATCATGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtagattcgcacacttgcctctattgtttttctttctcatatgcttgctttagagaagggggaaaacactaatcgaatgtggctcacag

Basic information

species Zea mays
transcript GRMZM2G006507_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006507_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 3
AAGATCGAATGAGGGTTTGAGGCTCATATTTTCGGCAGTTATAGGTATCATGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtagattcgcacacttgcctctattgtttttctttctcatatgcttgctttagagaaggggg---aaaacactaatcgaatgtggctcacag
|||||| ||||||||  ||||||||||||| ||||||||| | ||| | ||| |||| ||| |||||||| | |||||||||||||| || |||||||||||  | | |  |  |||| ||| ||||||||  |  |||| |  ||  |||||  ||         |    |||    | ||    || |||
AAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGTGTTATGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18964821|gb|BM661215.1|BM661215
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtagattcgc ... tggctcacagCTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGC
EST: gi|32928324|gb|CF033136.1|CF033136
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtagattcgc ... tggctcacagCTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGC