1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACAATTCTCAAGGGAGAAATATTCCAGAGAGTGCACCCCAACCTGCTATTGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaatcttttagtttgatttgataatttggaagtaggaacctttaattgacattaatgcatgtccaccttctcaattttctcag
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|78113266|gb|DV531659.1|DV531659
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|5895762|gb|AW037008.1|AW037008
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGCTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|13178078|gb|BG349336.1|BG349336
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|60399773|gb|DN232583.1|DN232583
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211436012|gb|FL361903.1|FL361903
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211522061|gb|FL312388.1|FL312388
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTTCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTEST: gi|60355084|gb|DN222057.1|DN222057
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|13178341|gb|BG349599.1|BG349599
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGCTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATEST: gi|60358728|gb|DN225701.1|DN225701
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAAT
EST: AAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|14242681|gb|BG840373.2|BG840373
genomic: AAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|74242180|gb|DT650094.1|DT650094
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|76010926|gb|DT938096.1|DT938096
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|71774336|gb|DR972214.1|DR972214
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211186705|gb|FL252850.1|FL252850
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211186707|gb|FL252852.1|FL252852
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTTCACATTEST: gi|76010925|gb|DT938095.1|DT938095
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|211134484|gb|FL356345.1|FL356345
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTGEST: gi|211186703|gb|FL252848.1|FL252848
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTG
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTEST: gi|32918930|gb|CF023742.1|CF023742
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTT TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
genomic: TGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaat ... attttctcagTGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAATTCTCAAGGGAGAAATATTCCAGAGAGTGCACCCCAACCTGCTATTGTTTTGAGGATTGAAGATGGAAGCGAAACTTTACTTCCAATCATTGTTTgtacgtaaatcttttagtttgatttgataatttggaagtaggaacctttaattgacattaatgcatgtccaccttctcaattttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG