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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTCGAGATCATGTGGAGATGGTGCCAACGATACAGTCAATGACGATGAACAGCGGAATAGTGCATTAAGGCGATCGAATCTCTCGGCTTTTACAAGgtgcaaaacataatatcagtgtcattagtgagttatgaaagcaacagtatgttgggtactaacagttaccacttttattgcaag

Basic information

species Zea mays
transcript GRMZM2G005732_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005732_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g49460.3 (Oryza sativa), 5'ss of exon 9
---------AGAGGTCGAGATCATGTGGAGATGGTGCCAACGATACAGTCAATGACGATGAACAGCGGAATAGTGCATTAAGGCGATCGAATCTCTCGGCTTTTACAAGgtgcaaaacataatatcagtgtcattagtgagttatgaaagcaacagtatgttgggtactaacagttaccacttttattgcaag
         | ||||| |||||   ||| |||||||| ||||   || || | || ||   ||| ||||||  |   || || |||||  |||||||||| ||||| |||||||||||||||||||||||||  |||||||||| |||| ||    || ||||  ||||||| |||||   |||| |||||||
TAAGTTTGAAAAGGTCAAGATCGACTGGGGATGGTGCAAACG---CAATCCAAGAGGA---ACAACGGAATGTT---TTGAGACGATCAGATCTCTCGGCATTTACGAGgtgcaaaacataatatcagtgtcgctagtgagttaggaaaccattgttaagttgcatactaactgttac---ttttgttgcaag