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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTGTTGGATTGTTTCTTTGCCGTCTGGTTTGTTGTGGGAAATGTGTGGATGTTTGGTAGCCGTTCTTCTGCCCATGACGCTCCTAACCTATACAGgtatgtgttgattggttgcaatcctctagccacaacttagatgttttatctcttgtttgtaaccatttccag

Basic information

species Zea mays
transcript GRMZM2G004799_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004799_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g08340.1 (Oryza sativa), 5'ss of exon 4
AATTGGTGTTGGATTGTTTCTTTGCCGTCTGGTTTGTTGTGGGAAATGTGTGGATGTTTGGTAGCCGTTCTTCTGCCCATGACGCTCCTAACCTATACAGgtatgtgttgattggttgcaat------------cctctagccacaacttagatgttttatctcttgtttgtaaccatttc-cag
||||||   |||||||||||||||| || ||||||||||| || ||||||||||| || ||  ||||| |||||  |||||||||||||||| | ||||||| |||| || |  |  || ||            |||     | ||||||||||||||  ||  ||||| || | |||||  |||
AATTGGCTCTGGATTGTTTCTTTGCTGTGTGGTTTGTTGTTGGGAATGTGTGGATATTCGGGGGCCGTACTTCTCTCCATGACGCTCCTAACTTGTACAGgtctgtgatgctaagcagccatagacaatgtgttccttgcttctcaacttagatgtttactcatttgttagtgatcatttttcag

upper sequence: GRMZM2G004799_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G80400.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGGTGTTGGATTGTTTCTTTGCCGTCTGGTTTGTTGTGGGAAATGTGTGGATGTTTGGTAGCCGTTCTTCTGCCCATGACGCTCCTAACCTATACAGgtatgtg--------ttgattggttgcaatcctctagccacaacttagatgttttatctcttgtttgtaaccatttccag
|  ||| | | |||||||||||||| || |||||||||||||| ||||| ||||| |||||  | |  || ||| |   |||  ||||||| || ||||||||   |        || ||  | |   ||   | |   |  |  | ||  || || | ||  | | |  |   || |||
AGATGGCGATTGATTGTTTCTTTGCGGTGTGGTTTGTTGTGGGGAATGTATGGATATTTGGAGGTCACTCATCTCCTTCTGATTCTCCTAAACTGTACAGgtacacgccttcgacttcatccgctattatgtcccaatgaggaact-gaaattctaacactcatgtttttc---ttgcag

upper sequence: GRMZM2G004799_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g05120.t01 (Vitis vinifera), 5'ss of exon 3
AATTGGTGTTGGATTGTTTCTTTGCCGTCTGGTTTGTTGTGGGAAATGTGTGGATGTTTGGTAGCCGTTCTTCTGCCCATGACGCTCCTAACCTATACAGgtatgtgttgattggttgcaatcctctagccacaacttagatgttttatctcttg---tttgtaaccatttccag------------
|  |||  ||||| || |||||||| || |||||||||||||| ||||||||||| |||||  | |  |||||| ||  ||| ||||| ||  | ||||||||   ||||      || |            | | |   ||       || |||        ||   | ||  |            
AGATGGCCTTGGACTGCTTCTTTGCAGTGTGGTTTGTTGTGGGCAATGTGTGGATATTTGGAGGTCACTCTTCTCCCTCTGATGCTCCCAAATTGTACAGgtaatagttgtagttatgtatatagtccatttctattagaattccaccccttttgagccactcaagtgtctcttgcccttcctgcag