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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgcctcttcaactctttaatttgtcaattttagtaccgactgttcggtttagtaataacttgctaggttgttggtttcatgctatgttgtagg...

Basic information

species Zea mays
transcript GRMZM2G003692_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211527525|gb|FL409928.1|FL409928
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211174932|gb|FL421412.1|FL421412
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211280391|gb|FL376816.1|FL376816
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211267130|gb|FL426696.1|FL426696
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211126709|gb|FL428259.1|FL428259
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211245303|gb|FL400469.1|FL400469
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211070635|gb|FL369038.1|FL369038
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|32919174|gb|CF023986.1|CF023986
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211455863|gb|FL399438.1|FL399438
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGGATACTA
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTG-ATACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgcctcttcaactctttaatttgtcaattttagtaccgactgttcggtttagtaataacttgctaggttgttggtttcatgctatgttgtagg

- - - - - - -  GGAGCT