Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgc-aatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
||| |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||| | |||||||| ||||||||||||||||| ||||| | ||| | | | | ||| | ||| || | | | ||| | | | | | | | ||| | |||||||||
---------TCTTCTCGCTATTGCTGAGGAGACCTTGGCAGAGTTCATGTCGAAGGCGACAGGAACTGCTGTCGAATGGGTGCAAATGGTTGGGATGAAGgtaatgtattcgttgtacaagaa--------aactgtgcagtatgttgattttctctttccattcatgttttttttgttcaaatcaactgaaatgaaaatttgattacag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtg------atgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
||| || || |||||| ||||||| |||||| |||| | || || || || |||||||||||||||||||| || ||| |||||||||||||| || | | || | | ||| || | | |||| ||| || | | | | | | | ||| | | |||| | | || | | ||| |
---------TCTTCTTGCAATTGCTCAGGAGACCCTGGCGGCGTTCCTTTCAAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGgtgtgacctattcaataattcttcttcatggt-cattgcttgcataaaacata-tgtatttgt-atgattatattt-tgcctctcattt--tttctgtcttcgtgtag-------
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgtt----ttcttacatcgtgtagtacttgtataca-atgcaatatcgtggcgaaaactatgctg---atatctctgacctgattccaaacgcggtgctgattacag
||| ||||| || ||||||||||| |||| |||||| | |||||||| || |||||||||||| ||||||| |||||| ||||||||||||| ||| ||| || |||||| || | | || |||||| | || ||| | | || | || || | | | ||||| || | | |
---------TCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGgt-atgccctttttaatattctta-attgctt-gtgtttgtatgtatatttcataaatttgtgatattgttgttgtgtgtttgttcattgtgattttcaatgagtag----------
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtact------tgttttcttacatcgtgtagtacttgtatacaatgca-atatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag--
||| ||||| || ||||||||||| |||| |||||| | |||||||| || |||||||||||| ||||||| |||||| ||||||||||||| ||| | | | | | | || | || | | ||| ||| | ||| | || | || | || | | || || | | | |
---------TCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGgtaatgccccgtttaataatctttgatgcttggttttttttctttcttatgtttgtataattcataaatatttgttaatgttgttgtgtttttgttaattgcaatttgcaatgaatag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
||| || ||||||||| ||||||| | | ||||||| | ||||| || || |||||||||||||||||||| |||||| ||||||||||||| ||| || | || | ||| || | | |||| ||| ||| | | | | | | || || | | || | | |
---------TCTTCTTGCTATTGCTCAGGAGACCCTAGTGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAGATGATTGGGATGAAGgt-atg-acctacttctt--catggt-cattgcttgcata-aatatattggtataattatattttgcctcattttttctgtcttaatgtag------------------
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgt------acttgttttcttacatcgt-gtagtacttgtatacaatgcaata-tcgtggc-gaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
|| || |||| || |||||| | | || |||||| | |||||||| || ||||||||||| ||||||| |||||| ||||||||||||| || | || | || | || ||| | || | | || | || | ||| | ||| | | | || | | | |||| | | ||||| | ||
---------ACTCCTTTCTATAGCAGAGGAGGCCCTAGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTTGACTGGGTTCAGATGATTGGGATGAAGgtaatactttctggcctgaatactcttaaagttgtataatctgatttctattctttagttgtgtctgaagatgaagttgtttatgattatttgatga-accttcattgctggt-gtag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacc-tgattccaaacgcggtgctgattacag
||| ||| | ||||| |||||||| |||||||||||| | | |||||| || |||||||||||| ||||||| |||||| ||||||||||||| | ||| | || | ||| | | ||| | |||| | | | ||||| | | | |||| | | | || || | | |
---------TCTTCTCTCGATTGCGGAGGAGACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGgtagataagttgaagtattttaacgtttt-catatgtgga-aatgaagtggtttttagaaaa-tgttttaatatgtattttcatggttatgtatgtag------------
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 4
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
||||||||| || ||||||||||| |||| |||||| |||||||||| || |||||||||||| ||||||| |||||| ||||||||||||| | | | ||| | | | || || | ||| || | || | | || | | ||||| | | | |
---------TCTACTCGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTGTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGgtacaatctctttcagcttcctttctttaa---tttcaccagttgctttaccttgtagcagttcccaaatgtaaccatcttttgatttcca-tgtag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78082046|gb|DV510458.1|DV510458EST: CCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAG CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGC
genomic: CCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtact ... ctgattacagCCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCCCAGTCTACTCGCTATTGCTGAGGAGACATTGGCGGAGTTCATGTCCAAGGCGACCGGAACTGCTGTCAACTGGGTGCAGATGGTTGGGATGAAGgtgatgtacttgttttcttacatcgtgtagtacttgtatacaatgcaatatcgtggcgaaaactatgctgatatctctgacctgattccaaacgcggtgctgattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG