1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaactgatttgattattatactatactcgtgtgatgaatttgttggaggtctttagtactaatggtttgaagcaatgtggtaccacag
species | Zea mays |
transcript | GRMZM2G003076_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACAEST: gi|211382284|gb|FL169263.1|FL169263
genomic: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaact ... ggtaccacagATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACA
EST: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG ATAATACAACATGTGCTTCTGGATATGCCEST: gi|148948893|gb|EC894307.2|EC894307
genomic: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaact ... ggtaccacagATAATACAACATGTGCTTCTGGATATGCC
EST: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACAEST: gi|149081139|gb|EE170248.2|EE170248
genomic: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaact ... ggtaccacagATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACA
EST: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACA
genomic: GGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaact ... ggtaccacagATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAGgtttgtaactgatttgattattatactatactcgtgtgatgaatttgttggaggtctttagtactaatggtttgaagcaatgtggtaccacag
- - - - - - - - - TGCTGC