1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGTAAAAGGCTTGCCCGTGAAAATGCTAAAGATATTATAGCATGTGGTTTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattactcttcctaattttgattgatattttaatttttgactgattttttggtccatccctaaggaagtcaataccatgctgtaaatcttggttttgattgttatttgcaaactaataaaccctctggccttgtctcacag
species | Zea mays |
transcript | GRMZM2G002687_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|148959767|gb|EC905658.2|EC905658
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGATAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|67037924|gb|CO464466.1|CO464466
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|6020814|gb|AW065742.1|AW065742
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: ATTCATTTTCTCTGATTTTTCTTTTGNTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|149010069|gb|EE041876.2|EE041876
genomic: ATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|71305908|gb|DR789081.1|DR789081
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTGACATTTGAA-GAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|148935574|gb|EC879617.2|EC879617
genomic: TTGACATT-GAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAEST: gi|149105517|gb|EE291042.2|EE291042
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|9953035|gb|BE639618.1|BE639618
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGCTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|91049846|gb|EB160264.1|EB160264
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|211139771|gb|FL315903.1|FL315903
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|149073834|gb|EE162156.2|EE162156
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|67014073|gb|CO442822.1|CO442822
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAAEST: gi|148973279|gb|EE024361.2|EE024361
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
EST: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGG TGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
genomic: TTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattac ... tgtctcacagTGCTTTTTATGAAAACATGATGCAAGTTGCCAGATGTGTAACTATGAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTAAAAGGCTTGCCCGTGAAAATGCTAAAGATATTATAGCATGTGGTTTTGACATTGAAAGAACATTCATTTTCTCTGATTTTTCTTTTGTTGGAGGgtaagattactcttcctaattttgattgatattttaatttttgactgattttttggtccatccctaaggaagtcaataccatgctgtaaatcttggttttgattgttatttgcaaactaataaaccctctggccttgtctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG