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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgctgtagtaacagtaacctcttcattggaaacacttgtaccataatttatttattttccttgctaacaaataccatgccttttctcataata...

Basic information

species Zea mays
transcript GRMZM2G002616_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002616_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g73880.1 (Oryza sativa), 5'ss of exon 3
CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgctgtagtaacagtaacctcttcattggaaacacttgtaccataatttatttattttccttgctaacaaataccatgccttttctcataata-
||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||      ||    ||   |   |   || ||| |  ||      |  ||||     |  |||||      |  ||||  ||  | ||| |   | ||  
CGATTATGGGGATGAAATTTGTGGAGCAGTTGTTAGTGTGCGTGGCAAGCAGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttctaagatatgtgctgctaatttatttgttacctgcagataataaccacatagttttcaacatcattaaat-tcaaacttttacatgtcattg

upper sequence: GRMZM2G002616_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G09630.2 (Glycine max), 5'ss of exon 3
CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgctgtagtaacagtaacctcttcattggaaacacttgtaccataatttatt--tattttccttgctaacaaataccatgccttttctcataata
 ||  | || |||||||| || || || ||||| | |||  |  | | |||||||| ||||||||||||||| || || ||| | |||||||| |||||||||      || |     |||| |  | |   |||       || | || |  |||| |  | |  | |  |            | |    ||    ||   
TGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGgtaacattcctatttattcagttagttttggtttgtttctttttttccctttgtttactattgtgctgcaggtgggagggagtgagggagatttatctag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60356415|gb|DN223388.1|DN223388
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60349185|gb|DN216158.1|DN216158
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60339268|gb|DN206241.1|DN206241
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|148968176|gb|EE019466.2|EE019466
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|110195701|gb|EC877598.1|EC877598
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|42492011|gb|CK701057.1|CK701057
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60359494|gb|DN226467.1|DN226467
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|4647639|gb|AI622714.1|AI622714
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|16377497|gb|BI991969.1|BI991969
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|88852805|gb|DY543029.1|DY543029
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|78544202|gb|DV621700.1|DV621700
EST:     AGGAAAGAATTGCTATCTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|116818839|gb|EC861887.1|EC861887
EST:     AGGAAAGAATTGCTATCTGGACGAAAAATGCTGCCAATGAAGCTGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|32828562|gb|CD968240.1|CD968240
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|88852761|gb|DY542985.1|DY542985
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|88852720|gb|DY542944.1|DY542944
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60356256|gb|DN223229.1|DN223229
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|211221053|gb|FL468691.1|FL468691
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|20336959|gb|BQ172589.1|BQ172589
EST:     AGGAAAGAATTGCTATCTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTAAGCATCGGGAAGCAGCGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|32829653|gb|CD969331.1|CD969331
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|166635526|gb|EG225540.1|EG225540
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGG
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGG
EST: gi|88852748|gb|DY542972.1|DY542972
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|91053164|gb|EB163582.1|EB163582
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTTTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60346333|gb|DN213306.1|DN213306
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|32860049|gb|CD999730.1|CD999730
EST:     AGGAAAAAATTGCTATTTGGACAAAAAATGCTGCCAATGAAACCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTTTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60347390|gb|DN214363.1|DN214363
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|88852738|gb|DY542962.1|DY542962
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTATATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|44900742|gb|CK827287.1|CK827287
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|29577092|gb|CB617204.1|CB617204
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60357390|gb|DN224363.1|DN224363
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|71447985|gb|DR829035.1|DR829035
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60398596|gb|DN231412.1|DN231412
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|211235178|gb|FL451436.1|FL451436
EST:     AGGAAAGAATTGCTATTTGGACAAGAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAGGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|37379766|gb|CF626640.1|CF626640
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|12968083|gb|BG265030.1|BG265030
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|148968177|gb|EE019467.2|EE019467
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60353078|gb|DN220051.1|DN220051
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|30088194|gb|CB886399.1|CB886399
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|60355408|gb|DN222381.1|DN222381
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|213175369|gb|FM190157.1|FM190157
EST:     AGGAAAGAATTGCTATTGGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|6469002|gb|AW191778.1|AW191778
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|211235179|gb|FL451437.1|FL451437
EST:     AGGAAAGAATTGCTATTTGGACAAGAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAGGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|213178516|gb|FM182938.1|FM182938
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|32858290|gb|CD997971.1|CD997971
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|85152888|gb|DW587890.1|DW587890
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|32860050|gb|CD999731.1|CD999731
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|88852740|gb|DY542964.1|DY542964
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACATG-ACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|50334082|gb|CO529208.1|CO529208
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|37394065|gb|CF634302.1|CF634302
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGATGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|149089128|gb|EE178311.2|EE178311
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|211425446|gb|FL011471.1|FL011471
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|148928878|gb|EC873836.2|EC873836
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTTTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|12968082|gb|BG265029.1|BG265029
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|6601755|gb|AW256196.1|AW256196
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCTGCTCAG                         GTTAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|91053165|gb|EB163583.1|EB163583
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|213171363|gb|FM192078.1|FM192078
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATT
EST: gi|148933696|gb|EC877599.2|EC877599
EST:     AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAG                         GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGAC
genomic: AGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 473

CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 293

CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 403

CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 239

CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgc ... cctctatcagGTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACTATGGTGATGAAATTTGTGGCGCAGTTGTCAGTGTGCGTGGGAAGCAGGAAAGAATTGCTATTTGGACAAAAAATGCTGCCAATGAAGCCGCTCAGgtatatgcgctgtagtaacagtaacctcttcattggaaacacttgtaccataatttatttattttccttgctaacaaataccatgccttttctcataata

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaata