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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCCGGACGACAAGCAGCGCAAGGAGCTGAGTCGGGAGCTGGGTCTGGTACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcctgactaatctcgccctgttcttcgctctcctgtgcgttcagttgtgtgactaatctcaactgcaaaggcagacgcgtcgtcgcaactact...

Basic information

species Zea mays
transcript GRMZM2G001289_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001289_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34024 (Selaginella moellendorffii), 5'ss of exon 2
GCACCCGGACGACAAGCAGCGCAAGGAGCTGAGTCGGGAGCTGGGTCTGGTACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcctgactaatctcgccctgttcttcgctctcctgtgcgttcagttgtgtgactaatctcaactgcaaaggcagacgcgtcgtcgcaactact
 || || ||||| ||||||||| |||||||||| |||||||| || ||||  || |  || ||||||||||||||||||||    ||||||||  | ||||| | |||     ||      ||  | |  || ||  | |||    |  |    | |  ||  |||   | |                            
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgt-aggatagaagctccaaaagcttt-tctttggcgtttctg---atgtaaagatcttccttgtctgtccag----------------------------

upper sequence: GRMZM2G001289_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
GCACCCGGACGACAAGCAGCGCAAGGAGCTGAGTCGGGAGCTGGGTCTGGTACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcctgactaatctcgccctgttcttcgctctcctgtgcgttcagttgtgtgactaatctcaactgcaaaggcagacgcgtcgtcgcaactact
 || || ||||| ||||||||| |||||||||| |||||||| || ||||  || |  || ||||||||||||||||||||    ||||||||  | ||||| | |||     ||   |     || ||||| |   |      |||  ||   | |  ||   ||   | |                            
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgt-aggatagaagct--ccaaaagcttttctttggcgtttctgacgtaaag--atcttccttgcctgtccag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092032|gb|DV520406.1|DV520406
EST:     ACCCCTCCAGGTCAAGTTCTGGTTCCAGAAACA-GCGCACGCAAATGAAG                         AAACAGCACGAGCGGCAGGAG
genomic: ACCCCTCCAGGTCAAGTTCTGGTTCCAGAA-CAAGCGCACGCAAATGAAGgtgacgatcc ... cgacttgcagAACCAGCACGAGCGGCAGGAG
EST: gi|71449408|gb|DR830458.1|DR830458
EST:     TACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAG                         AACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAG
genomic: TACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcc ... cgacttgcagAACCAGCACGAGCGGCAGGAGAACTCGCAGCTGAGGGCGGAGAACGAGAAG