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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagcccttttcaaagcattattatactttctttgtacttgctttgattccttacaaagcattacagctattagtttttttgtgctgtttgtagacatt...

Basic information

species Zea mays
transcript GRMZM2G001272_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001272_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g06630.3 (Oryza sativa), 5'ss of exon 3
CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagcccttttcaaagcattattatactttctttgtacttgctttgattccttacaaagcattacagctattagtttttttgtgctgtttgtagacatt----
|||||||| ||  ||| | ||||||| |||||||| ||||||||||||||||| ||||| ||| || | ||||| || |||||| |||||||||| || ||  || ||| |  |  | | |||||||| |||      | | |  |    |    |  ||| ||| |      |||   |      ||    
CCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCTACCCAAACTTACAACCTATATCTATGTCTTAGCTCAGgtaagcctttatcctagtattgtgtt--tgtttttgtactcgctacatggcatgatta--tttgggggaaattggttctacgacactgaaagatcctgttgtga

upper sequence: GRMZM2G001272_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G76900.1 (Arabidopsis thaliana), 5'ss of exon 3
CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagcccttttcaaagcattattatactttctttgtacttgctttgattccttacaaagca---ttacagctattagtttttttgtgctgtttgtagacatt
||||| ||  |||||| ||| || |||||||| |||||||||||||||||||     || ||  | || ||||| || || ||  | |||||  | |  |       ||  | |  |||  ||  |  |  ||   |    | |||||||    |  |   || | | |||                    
CCTGGACCAAGAGATGCAACAATGCAATGCTTTATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGgtaaaacttcat-------tttctctgtttttgttccaagtttttctctgttctccaaagcaaatctgaaagcatgaatatttgcag----------------

upper sequence: GRMZM2G001272_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0055g00460.t01 (Vitis vinifera), 5'ss of exon 4
CCTGGGCCTCGAGATGTAACCATCCAATGCTTCATCAAAAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagcc-cttttcaaagcattat---tatactttctttgtacttgctttgattccttacaaagcattacagctat-tagtttttttgtgctgtttgtagacatt
|| ||||| || ||||  || |||||||||||||||||||||||||||||||    ||| ||| || | | ||| || |||||| | ||||| |  |||||    || || |   ||  |||  |||||   |  || |     ||| ||||  || |    || |  |||| || | || ||| |       
CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTAACTTAACTTACCACCTTTTTCTATGTCTTAGCCCTGgtaatcttcttttttttgctttttcggtaaccttagtttgttaatttttggcagttttataaagttttccttgcatgttcttttctttttctttttcttt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32845252|gb|CD984933.1|CD984933
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|32845238|gb|CD984919.1|CD984919
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|32845629|gb|CD985310.1|CD985310
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|50335303|gb|CO530429.1|CO530429
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149077539|gb|EE166236.2|EE166236
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|148955113|gb|EC900627.2|EC900627
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|33098000|gb|CF057960.1|CF057960
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTTCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|93014712|gb|EB640232.1|EB640232
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|148965634|gb|EE016482.2|EE016482
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149111854|gb|EE191009.2|EE191009
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|211530040|gb|FL043874.1|FL043874
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTC
EST: gi|149029779|gb|EE286269.2|EE286269
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149044467|gb|EE047589.2|EE047589
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|211530043|gb|FL043877.1|FL043877
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTTGTTGAAAGTGGCAAGTTCCTCCTATGTGGCGAAACGGAACCT
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTT-GTTGAAAGTGGCAAGTTCCTCCTATGTG-CGAAACGGA-CCT
EST: gi|149101708|gb|EE187845.2|EE187845
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149074592|gb|EE162995.2|EE162995
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|86468999|gb|DY235369.1|DY235369
EST:     AGGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGGGGCAAGTTCCTCCTATGTGCAAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|78085094|gb|DV513487.1|DV513487
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149076331|gb|EE164946.2|EE164946
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTG
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTG
EST: gi|32845394|gb|CD985075.1|CD985075
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|148945477|gb|EC890712.2|EC890712
EST:     AAGGGATAAATCTACTCCAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTNNN
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|50333305|gb|CO528431.1|CO528431
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|148940279|gb|EC885058.2|EC885058
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|32845562|gb|CD985243.1|CD985243
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
EST: gi|149014539|gb|EE044173.2|EE044173
EST:     AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAG                         CTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC
genomic: AAGGGATAAATCTACTCAAACCTACTACTTGTATCTGTGCCTTAGCACAGgtaagccctt ... ttttctacagCTGTGCTTGTTGAAAGTGGCAAGTTCCTCCTATGTGCGAAACGGACCTCCC