1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAAGCAGGAGTGAGAAGAAGAGCCGCAAGGCCATGCTGAAGCTTGGCATGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcaccatttactcagatcacacaaactggcttatctttattgttgcctggctaacatgatatgctatttccag
species | Zea mays |
transcript | GRMZM2G000923_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|60352329|gb|DN219302.1|DN219302
genomic: CCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|31910389|gb|CD651399.1|CD651399
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|37386513|gb|CF630442.1|CF630442
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|12971083|gb|BG267306.1|BG267306
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|4776550|gb|AI665553.1|AI665553
genomic: TGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|5124085|gb|AI745926.1|AI745926
genomic: TGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|30087450|gb|CB885656.1|CB885656
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|78026202|gb|DV494589.1|DV494589
genomic: TGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|47961571|gb|CN844280.1|CN844280
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: GTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|37392534|gb|CF633519.1|CF633519
genomic: GTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|60348322|gb|DN215295.1|DN215295
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|78025744|gb|DV494131.1|DV494131
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|78025838|gb|DV494225.1|DV494225
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|24766680|gb|CA401827.1|CA401827
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCNCTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|60396469|gb|DN229338.1|DN229338
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|30088348|gb|CB886553.1|CB886553
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGGGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|31910387|gb|CD651398.1|CD651398
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCNCTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|211430625|gb|FL465163.1|FL465163
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: CGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|74240376|gb|DT648290.1|DT648290
genomic: CGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ACACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGACEST: gi|31910255|gb|CD651332.1|CD651332
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
EST: TGAAGCCCATCNCTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAAT ATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
genomic: TGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcacc ... ctatttccagATACTCTTTGTCATCTCCAAACCAGATGTGTTCAAGAGCCCGAATTCCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGCAGGAGTGAGAAGAAGAGCCGCAAGGCCATGCTGAAGCTTGGCATGAAGCCCATCACTGGTGTCAGCCGCGTCACTGTAAAGAAAAGCAAGAATgtaattcaccatttactcagatcacacaaactggcttatctttattgttgcctggctaacatgatatgctatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA