1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACCAGGGCCACGCCTTCAACGGCAAGCGGACCAAAACGGCTCGCTCTCAGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcacgcatttctcagtcatacatggcctccagcttcgaattcataccttcaactccaagtgctcaatcttgccactgctgttgtgcag
species | Zea mays |
transcript | GRMZM2G000825_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|78091042|gb|DV519416.1|DV519416
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|78074236|gb|DV502670.1|DV502670
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71329748|gb|DR801587.1|DR801587
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71332935|gb|DR803491.1|DR803491
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|94476522|gb|EB705480.1|EB705480
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|50338121|gb|CO533247.1|CO533247
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGEST: gi|91050311|gb|EB160729.1|EB160729
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAG
EST: ACGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGAGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71427332|gb|DR808382.1|DR808382
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|78123617|gb|DV542001.1|DV542001
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCGAGTTCCGGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCEST: gi|91053161|gb|EB163579.1|EB163579
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGC
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|50324554|gb|CO519680.1|CO519680
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|91049686|gb|EB160104.1|EB160104
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|30031735|gb|CB833586.1|CB833586
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|91872937|gb|EB402894.1|EB402894
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71773656|gb|DR971553.1|DR971553
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71449759|gb|DR830809.1|DR830809
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71772102|gb|DR970039.1|DR970039
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71771752|gb|DR969689.1|DR969689
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAGEST: gi|71324131|gb|DR798765.1|DR798765
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
EST: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTT GGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
genomic: AGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcac ... tgttgtgcagGGTAACCTGGGGTGGGCGCTGATGCAGAAGGAGAACTACACGGAAGCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCAGGGCCACGCCTTCAACGGCAAGCGGACCAAAACGGCTCGCTCTCAGGGCCGCAAGTTCCAGGTCACCCTGGAGCAAGAAGCCACCAGGCTCCTTgtaagtgcacgcatttctcagtcatacatggcctccagcttcgaattcataccttcaactccaagtgctcaatcttgccactgctgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC