1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtacttttttcccttcacgtttgtcttctggtatttgccattttcagacacaggtataattctgtttcttgtgtgatattacag
species | Zea mays |
transcript | GRMZM2G000718_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|28361821|gb|CB240177.1|CB240177
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211142613|gb|FL363442.1|FL363442
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211028706|gb|FL343658.1|FL343658
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211108631|gb|FL325828.1|FL325828
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|149002889|gb|EE038886.2|EE038886
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211049854|gb|FL341783.1|FL341783
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGANCTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|148941490|gb|EC886419.2|EC886419
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211276380|gb|FL349488.1|FL349488
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACGTAEST: gi|21843414|gb|BQ703995.1|BQ703995
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACGTA
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAACEST: gi|211224799|gb|FL342363.1|FL342363
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGAEST: gi|37420501|gb|CF647941.1|CF647941
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGA
EST: GTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211541608|gb|FL367257.1|FL367257
genomic: GTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|33466594|gb|CF243643.1|CF243643
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|71327359|gb|DR800293.1|DR800293
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211440064|gb|FL316511.1|FL316511
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211116685|gb|FL364784.1|FL364784
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAEST: gi|148993116|gb|EE033716.2|EE033716
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAA
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211164059|gb|FL355972.1|FL355972
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTGAGGAAAACEST: gi|149112851|gb|EE295664.2|EE295664
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|149009782|gb|EE041679.2|EE041679
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|78117925|gb|DV536312.1|DV536312
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211067349|gb|FL342683.1|FL342683
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211037667|gb|FL309759.1|FL309759
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|149089650|gb|EE178904.2|EE178904
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|78083753|gb|DV512146.1|DV512146
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211285641|gb|FL366666.1|FL366666
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211510365|gb|FL349271.1|FL349271
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAA-CEST: gi|211162036|gb|FL334323.1|FL334323
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211100818|gb|FL317193.1|FL317193
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTGAGGAAAACEST: gi|211264789|gb|FL317771.1|FL317771
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAEST: gi|211103512|gb|FL329043.1|FL329043
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAA
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGEST: gi|91869534|gb|EB400432.1|EB400432
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGG
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211125915|gb|FL330703.1|FL330703
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGGAAAACEST: gi|30088413|gb|CB886618.1|CB886618
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGG-AAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211512069|gb|FL314329.1|FL314329
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTA-GGAAAACEST: gi|28361634|gb|CB239990.1|CB239990
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211262335|gb|FL317743.1|FL317743
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211314807|gb|FL364565.1|FL364565
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211411458|gb|FL312810.1|FL312810
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|149074291|gb|EE162669.2|EE162669
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211529407|gb|FL360248.1|FL360248
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAEST: gi|50333644|gb|CO528770.1|CO528770
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGA
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|211190651|gb|FL327243.1|FL327243
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|26456321|gb|CA827904.1|CA827904
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAACEST: gi|211477883|gb|FL341268.1|FL341268
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAACEST: gi|20301313|gb|BQ164256.1|BQ164256
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTAACCTTGAGGAAAACEST: gi|211018150|gb|FL327162.1|FL327162
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
EST: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATG ATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
genomic: AGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtactt ... gatattacagATCAAAGAACTCAACTCCTATGTGACCTTAAGGAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGATCAAAGAGTTTGACCGTATACTCAAGGATGAGGAGAAAAAGAACACCCCTGATGTCAACAAGCAGCTCAATGACAAGAAGCAGTTCATGgttggtacttttttcccttcacgtttgtcttctggtatttgccattttcagacacaggtataattctgtttcttgtgtgatattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC