1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCGCAGCGCAAAGGGCGGGTTTATGTCCACTGCACCGCTGGGCTTGGGAGAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgccccatctcatcatatgcgtagcactatgagatttgaaactgtttttttgcttatctatcctcttacacgcag
species | Zea mays |
transcript | GRMZM2G000660_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCACCTGCGGTTGCAATCGCTTACATGTTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|76290166|gb|DV029734.1|DV029734
genomic: AGCACCTGCGGTTGCAATCGCTTACATG-TTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|76920052|gb|DV167984.1|DV167984
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|84969993|gb|DV171122.2|DV171122
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|78075797|gb|DV504231.1|DV504231
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|93283003|gb|EB675267.1|EB675267
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|71302330|gb|DR787283.1|DR787283
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACTTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|28984682|gb|BQ539185.2|BQ539185
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|71302332|gb|DR787284.1|DR787284
genomic: GCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAAEST: gi|71311577|gb|DR792164.1|DR792164
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAA
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATEST: gi|71312902|gb|DR792973.1|DR792973
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTAT
EST: AGCACCTGCGGTTGTCA-TCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGTEST: gi|16378243|gb|BI992345.1|BI992345
genomic: AGCACCTGCGGTTG-CAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAG-
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|78105235|gb|DV523653.1|DV523653
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|83279413|gb|DV943421.1|DV943421
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|78105236|gb|DV523654.1|DV523654
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|76920051|gb|DV167983.1|DV167983
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|71426637|gb|DR807687.1|DR807687
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCEST: gi|76290165|gb|DV029733.1|DV029733
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|78075798|gb|DV504232.1|DV504232
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|101383569|gb|EB813840.1|EB813840
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|76927038|gb|DV171123.1|DV171123
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGCEST: gi|71311576|gb|DR792163.1|DR792163
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
EST: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGAT CTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
genomic: GAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgc ... ttacacgcagCTTAACACGGCTTATCAGAAGCTAACCTCCATAAGGCCCTGTGGACCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCAGCGCAAAGGGCGGGTTTATGTCCACTGCACCGCTGGGCTTGGGAGAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtctgccccatctcatcatatgcgtagcactatgagatttgaaactgtttttttgcttatctatcctcttacacgcag
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