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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccgccggctcacaacgaatcaagctgatgcatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Zea mays
transcript GRMZM2G000510_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000510_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g48040.1 (Oryza sativa), 5'ss of exon 3
GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccgccggct-cacaacgaatcaagctgatgcatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--
|| |||||||||||||| ||||||||||| || |||||||| ||| |  |||||||||| || ||||||| ||| ||   | |  ||      || |                                                            
GTGAAATCCTTCTACGTTGGCAAAGACCATGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgt-actctaccaactctgctttgcttcccattcccaactagtactcactccgttatatgctgcttcttctcatctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149072257|gb|EE160513.2|EE160513
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|71332543|gb|DR803241.1|DR803241
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211253778|gb|FL369138.1|FL369138
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|78108615|gb|DV527033.1|DV527033
EST:     AATCCTTCTACGTCGGCAAAGACCAAGTTGGGGATGTCCCTTTGTCCAA-                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|31348998|gb|CD433355.1|CD433355
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|71303282|gb|DR787744.1|DR787744
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211285989|gb|FL388300.1|FL388300
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211421416|gb|FL412840.1|FL412840
EST:     AATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTGGTGCCATC
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTGGTGCCATC
EST: gi|50333857|gb|CO528983.1|CO528983
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211527528|gb|FL409931.1|FL409931
EST:     AATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCC-TTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTGGTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTGGTG
EST: gi|31363588|gb|CD447945.1|CD447945
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|89249688|gb|DY621474.1|DY621474
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|148986615|gb|EE030385.2|EE030385
EST:     ATCCTTCTACGTCGGCAAAGACCCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: ATCCTTCTACGTCGGCAAAGACC-ACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211234205|gb|FK951233.1|FK951233
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|31349105|gb|CD433462.1|CD433462
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211227505|gb|FL377297.1|FL377297
EST:     ATCCTTCTACGTCGGCAAAGAACCATGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: ATCCTTCTACGTCGGCAAAGA-CCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|149014447|gb|EE044057.2|EE044057
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|50324459|gb|CO519585.1|CO519585
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|71437614|gb|DR818664.1|DR818664
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|76291091|gb|DV030659.1|DV030659
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|148932353|gb|EC875981.2|EC875981
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211209142|gb|FL374139.1|FL374139
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTNGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGG-TTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|71437391|gb|DR818441.1|DR818441
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211047692|gb|FL371292.1|FL371292
EST:     AATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|76281516|gb|DV021084.1|DV021084
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211234204|gb|FK951232.1|FK951232
EST:     AATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|71447490|gb|DR828540.1|DR828540
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|93281478|gb|EB673742.1|EB673742
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|76294190|gb|DV033758.1|DV033758
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|93015136|gb|EB640656.1|EB640656
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|148954532|gb|EC899968.2|EC899968
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|12045964|gb|BF727999.1|BF727999
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|78179369|gb|DV549742.1|DV549742
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|78109062|gb|DV527479.1|DV527479
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211415548|gb|FL372632.1|FL372632
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|22545542|gb|BU097901.1|BU097901
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|211229469|gb|FL370963.1|FL370963
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACT
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACT
EST: gi|6827024|gb|AW330667.1|AW330667
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|148947408|gb|EC892822.2|EC892822
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|76292715|gb|DV032283.1|DV032283
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|88751922|gb|DY536063.1|DY536063
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|148931428|gb|EC874386.2|EC874386
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|76911479|gb|DV164289.1|DV164289
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|67028232|gb|CO456981.1|CO456981
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG
EST: gi|149110174|gb|EE293989.2|EE293989
EST:     AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAG                         AAGATAGCCGCCGGCTTCACAACTG
genomic: AATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccg ... tcgtgtccagAAGATAGCCGCCGGCTTCACAACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGaagatagccgccggctcacaacgaatcaagctgatgcatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn

- - - - - - - - -  GCAAAG