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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttcagttattcgtaagtgaatttgagttgctgtgttaatttatgctttgctgactcgaaatgctgtggtggcag

Basic information

species Zea mays
transcript GRMZM2G000393_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 3
GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttcagttattcgtaagtgaatttgagttgctgtgttaatttatgctttgctgactcgaaatgc----tgtggtggcag
 | ||||||||||| ||||||||||||||||| ||||| || || |||| || | |   |  |   || |   ||||   || ||      | |   | |   ||||||| | ||||||     | |||||||||
CTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATgtaattcccccctctctc-tctctgaagaggaattcagaattcagaattttagttgctgatttgaaatgggttgtttggtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982630|gb|EE028428.2|EE028428
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|78093005|gb|DV521379.1|DV521379
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|6626361|gb|AW257893.1|AW257893
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211109595|gb|FL330293.1|FL330293
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|149106895|gb|EE188795.2|EE188795
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|76920610|gb|DV168260.1|DV168260
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|31359008|gb|CD443365.1|CD443365
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211264751|gb|FL317287.1|FL317287
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211262310|gb|FL317272.1|FL317272
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|78022345|gb|DV490732.1|DV490732
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|31357853|gb|CD442210.1|CD442210
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211070150|gb|FL344929.1|FL344929
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|149096405|gb|EE182139.2|EE182139
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|22819731|gb|BU499821.1|BU499821
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211035632|gb|FL325397.1|FL325397
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211309691|gb|FL309467.1|FL309467
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211208342|gb|FL339681.1|FL339681
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211177142|gb|FL336670.1|FL336670
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211537774|gb|FL336420.1|FL336420
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211507519|gb|FL321825.1|FL321825
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211335749|gb|FL352451.1|FL352451
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211130919|gb|FL136657.1|FL136657
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211061191|gb|FL322363.1|FL322363
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211312454|gb|FL348222.1|FL348222
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|21843330|gb|BQ703911.1|BQ703911
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGTTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|149005474|gb|EE040029.2|EE040029
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211365022|gb|FL342943.1|FL342943
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|50323553|gb|CO518679.1|CO518679
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|89250822|gb|DY622608.1|DY622608
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211257460|gb|FL317713.1|FL317713
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|94479524|gb|EB708482.1|EB708482
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|149064607|gb|EE286478.2|EE286478
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71311661|gb|DR792235.1|DR792235
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211492170|gb|FL337340.1|FL337340
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|148994442|gb|EE034088.2|EE034088
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71435123|gb|DR816173.1|DR816173
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71448461|gb|DR829511.1|DR829511
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCCA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCTA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|22521196|gb|BU080007.1|BU080007
EST:     GTCCCGAAGGTGCTCTCGGCGGAGGACAAGCTTATTTACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211308207|gb|FL338834.1|FL338834
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211211310|gb|FL358291.1|FL358291
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|21390137|gb|BQ528186.1|BQ528186
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211401858|gb|FL337637.1|FL337637
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|78090931|gb|DV519305.1|DV519305
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|5525207|gb|AI861205.1|AI861205
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211281812|gb|FL349985.1|FL349985
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211281262|gb|FL322093.1|FL322093
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211340421|gb|FL351902.1|FL351902
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211183427|gb|FL326865.1|FL326865
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCWAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211543122|gb|FL312498.1|FL312498
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGG
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGG
EST: gi|211510671|gb|FL361525.1|FL361525
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAKATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|67038278|gb|CO464608.1|CO464608
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211263236|gb|FL358750.1|FL358750
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211283190|gb|FL330913.1|FL330913
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211015023|gb|FL312922.1|FL312922
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211439880|gb|FL309180.1|FL309180
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCA
EST: gi|211120329|gb|FL321087.1|FL321087
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAG
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAG
EST: gi|211135055|gb|FL315830.1|FL315830
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71436237|gb|DR817287.1|DR817287
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211425180|gb|FL347842.1|FL347842
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211528488|gb|FL328390.1|FL328390
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71772160|gb|DR970097.1|DR970097
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211507246|gb|FL308755.1|FL308755
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|148938471|gb|EC882790.2|EC882790
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211430698|gb|FL357575.1|FL357575
EST:     GTCCCGAAG-TGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211325278|gb|FL366950.1|FL366950
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|211155637|gb|FL334262.1|FL334262
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|71426994|gb|DR808044.1|DR808044
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
EST: gi|149084753|gb|EE174248.2|EE174248
EST:     GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAA                         GGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA
genomic: GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttc ... gtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCCGAAGGTGCTCTCGGTGGAGGACAAGCTTAGGAACCTTGGGTGCAAgtgagttttcagttattcgtaagtgaatttgagttgctgtgttaatttatgctttgctgactcgaaatgctgtggtggcag

- - - - - - - -  GGTGGA
- - - - - - - - - GTGGAG
- - - - - - - - -  TGGAGG
- - - - - - - - - - GGAGGA
- - - - - - - - - - - - - CAAGCT