1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAATGCTAGGAGAAAGCCACACACACCATCTGCTATTGTTATTGGTGGTGGGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcggtgttattttttttgtcatgtttcggtgttggtgtaatgttacaacttacaacctgtatttatttggcgaaaatgagtagaccctttgtgatccttttcaatttgtgtgacacattccag
species | Zea mays |
transcript | GRMZM2G000052_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|32841792|gb|CD981473.1|CD981473
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|211080232|gb|FL307134.1|FL307134
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTNGAEST: gi|23357677|gb|BU645326.1|BU645326
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACT-GA
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCEST: gi|94472196|gb|EB701154.1|EB701154
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|78023763|gb|DV492150.1|DV492150
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGATATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|91870692|gb|EB401035.1|EB401035
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|101384976|gb|EB814533.1|EB814533
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|101398264|gb|EB821005.1|EB821005
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|211350009|gb|FL351959.1|FL351959
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|71764900|gb|DR962837.1|DR962837
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|211328586|gb|FL315494.1|FL315494
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GGTATTCTACTGGAATCCCGTGATAGGATGGGTGGCAGAGGTCACACTGACEST: gi|211300846|gb|FL383949.1|FL383949
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|211500012|gb|FL307528.1|FL307528
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGGAATCCCGTGATAGGATTGGGTGGCAGAGTTCACACTGEST: gi|154130459|gb|EC872163.2|EC872163
genomic: G-TTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGG-AATCCCGTGATAGGATTGG-TGGCAGAGTTCACACTG
EST: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACEST: gi|211514296|gb|FL420360.1|FL420360
genomic: GGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
EST: TGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAG GTTATTCTACTGGAATCTCGTGATAGGATTGGTGGCACAGTTCACACTGAC
genomic: TGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcg ... cacattccagGTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCTAGGAGAAAGCCACACACACCATCTGCTATTGTTATTGGTGGTGGGTTTGCTGGTCTTGCTGCTGCTGATGCTCTCAGAAATGCATCCTTCCAGgtgattttcggtgttattttttttgtcatgtttcggtgttggtgtaatgttacaacttacaacctgtatttatttggcgaaaatgagtagaccctttgtgatccttttcaatttgtgtgacacattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT