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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGACGTGAATATCATGAAGAATATGGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtctcttgttgccctcacaatttagatttctcctccattgctggtgctataatagtaaaccgattatttgcggcgacgatgggaaattgtgtgtgttacgtag

Basic information

species Zea mays
transcript AC234160.1_FGT003
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC234160.1_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 5'ss of exon 3
GAGGACGTGAATATCATGAAGAATATGGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtctcttgttgccc-tcacaattta-gatttctcctccattg-------ctggtgctataatagtaaaccga--ttatttgcggcgacgatgggaaattgtgtgtgttacgtag
|||||||| || |||||||| | |||||| ||||| || ||||| || || ||||| ||||||||||||||||||||||   |  ||   ||||| | ||  ||| || || | |   |  |||        || |   | | | ||| |  | |  | | ||          |||     |||      | | |||
GAGGACGTAAACATCATGAAAAGTATGGGTTTCGATGCGTACCGCTTCTCAATCTCATGGTCAAGAATATTCCCAAgtaagctcccttaagttgctcgtcttaatctacgagtacaattttattattttggacttgatttctgaaagtgatgcaaactaacttatatttctcttggatgggtgttcactgtcc-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78081257|gb|DV509669.1|DV509669
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|78104077|gb|DV522495.1|DV522495
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|148941093|gb|EC885955.2|EC885955
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|93016856|gb|EB642376.1|EB642376
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|101386378|gb|EB815208.1|EB815208
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|71437588|gb|DR818638.1|DR818638
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
EST: gi|148979769|gb|EE026820.2|EE026820
EST:     GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAA                         ATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA
genomic: GGGGTTCGACGCTTACCGGTTTTCGATCTCTTGGTCAAGAATATTCCCAAgtatattgtc ... tgttacgtagATGGAACCGGAGAAGTGAACTGGAAAGGAGTGGCGTACTACAACAGGCTGA