1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattcatgcgtctagacacgatgttccccatataacaactgtcttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcag
species | Zea mays |
transcript | AC217358.3_FGT005 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|149110344|gb|EE190366.2|EE190366
genomic: GCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCA-CAACTTCEST: gi|9733307|gb|BE512059.1|BE512059
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|149076703|gb|EE165347.2|EE165347
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|33092429|gb|CF052423.1|CF052423
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|15215048|gb|BI431144.1|BI431144
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGAEST: gi|78081933|gb|DV510345.1|DV510345
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGA
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|148982739|gb|EE028558.2|EE028558
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|71308360|gb|DR790410.1|DR790410
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|149112958|gb|EE295743.2|EE295743
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|6021034|gb|AW065962.1|AW065962
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGGTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|6021466|gb|AW066394.1|AW066394
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|211504562|gb|FK951749.1|FK951749
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTKATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|78084473|gb|DV512866.1|DV512866
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|19437062|gb|BM953472.1|BM953472
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTTGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|31355780|gb|CD440137.1|CD440137
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|20507570|gb|BQ279689.1|BQ279689
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|60398117|gb|DN230933.1|DN230933
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|211504558|gb|FK951745.1|FK951745
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|148987626|gb|EE031500.2|EE031500
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|211504555|gb|FK951742.1|FK951742
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGNAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTEST: gi|76011854|gb|DT939024.1|DT939024
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGG-AGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTT
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|22715353|gb|BU197718.1|BU197718
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGEST: gi|78079465|gb|DV507877.1|DV507877
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGG
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|211504561|gb|FK951748.1|FK951748
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|31664014|gb|CD573194.1|CD573194
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|37418141|gb|CF646734.1|CF646734
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATATAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|31356533|gb|CD440890.1|CD440890
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|6536621|gb|AW224934.1|AW224934
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTCEST: gi|74243143|gb|DT651057.1|DT651057
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
EST: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAG GCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
genomic: AAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattca ... tccgatgcagGCTGTGAGCAGGGAGATTAGGAAGATTCTGACTGAGAGGGCCAACAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAACTTCAATGAGAGAGTTCTGCCTTCAATCATTCATGAAACACTCAAAGCTGTGGTTGCTCAATACAATGCCAGCCAGCTGATCACCCAGAGAGAGgtaccattcatgcgtctagacacgatgttccccatataacaactgtcttgctaggattggatgagattaggatatgttaacagttcattcatgcattcgattccgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT