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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag

Basic information

species Zea mays
transcript AC211785.2_FGT003
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag
| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| || ||||||||||||  || ||||||||  |         |    | ||  |  || ||  ||  ||  || || |  | | ||||| ||||| || ||||
GAAAGCTTGAAAGGAAAGCTGTCCTCAAAGCTATATGTGCTGGCTTTGAAGAAACTACCGAGCCAAATGTTTGTCTTAGTGATGgtaagt-ca-ataaactacat---------tttcgactattctgtatttagttgaatacagactgctgagtcttgagttgtttcaatacag

upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag
| ||  | ||||     ||||| || || ||||| ||| |||| |||||||||||||||||||||| ||||||| ||||   ||| |||    ||     | ||||     | || || |  ||   ||| ||| | |  ||     | |  | ||     || | ||    |||
GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAACTGTTTGCTTGAGCAGTGgcaagtgtttacttttttttta----ttcataca-aggaaaatatactttgtgacctgattctttctgactggcatactttatgggg-cag

upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------
| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||||||||||  ||||||  ||||   ||||||   |  |    || ||           |  | ||      | | || |||  |     |    |||||||     | ||| |||              
GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGgtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacc-tgaattgttttttgggttgcaaatcttctcttggcag

upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G45380.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctg----tttgaaaacag------------------
| ||  | ||||     ||||| || || ||||| ||| |||| |||||||||||||||||||||  ||||||| ||||   |||||  ||  | ||     |||  |   |  | || |  ||   ||| ||| |    | ||   |     |||| || |||    |||   |   |                  
GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTGgta--catgtttacttcttttttcttttggtaca-aggaaaatatactttgtggacttgaa-ttgttggttgtggacctgattctttctgactgggcatgctttattgggcag

upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------
| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||| ||||||  ||||||  ||||   ||||||   |  |    || ||           |  | ||      | | || |||  |     |    |||||||     | ||| |||              
GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACCGAACCAGCTGTTTGTTTGAGCAGTGgtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacc-tgaattgttttttgggttgcaaatcttctctcggcag

upper sequence: AC211785.2_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 5
GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGATGgtaagcacatataaactatttaacacctaatgcacaataagcaataatttattatatggaggctacaaattgttgagctgtttgaaaacag-----------------------------
| ||| | ||||     ||||| || || || |||||| |||||||||||||||| ||||| ||| |||||||  |||||| ||||||||   ||  |    ||  | ||  | | |   |||  |||  || | ||  || ||  |      |  |     |   |   ||                                
GAAAGTTGGAGAAAGGTGCTGTTCTGAAGGCCATTTGTTCTGGTTTTGAGGAAACCACTGAGCCAGATGTTTGTTTGAGTGGTGgtaagcttttaccataagttagatactaagttcggtatatccaa--atctcttg-attgactcgcttgctcatcagttttccttctaatctatttttttaatggattcttttcctggcag