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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCAAAACATTGCTTGGTGAACATGAGGGAAGGGCTCACAATTTGGCTATAGAGCCTGgtagtccttaaattttctacagctgtggtgaggaaggctctcttctacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Zea mays
transcript AC209819.3_FGT007
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC209819.3_FGT007 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g39760.1 (Oryza sativa), 5'ss of exon 3
GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCAAAACATTGCTTGGTGAACATGAGGGAAGGGCTCACAATTTGGCTATAGAGCCTGgtagtccttaaattttctacagctgtggtgaggaaggctctcttctacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------------------------------
                                            |||||| || || ||||| |||||||||||||| ||||| || |||||||| |||||||| |||||||| ||||| || || || ||   | ||| ||||                                                                                                             
--------------------------------------------ATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATgtagggaaccacggaccccctccctccttcacaaatgctcattttcagctatgtataaaatgcaaatgaatttcttactgtataactagccacttcccttcttgtgcag

upper sequence: AC209819.3_FGT007 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G23960.1 (Glycine max), 5'ss of exon 3
GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCAAAACATTGCTTGGTGAACATGAGGGAAGGGCTCACAATTTGGCTATAGAGCCTGgtagtccttaaattttctacagctgtggtgaggaaggctctcttctacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------
                                             |  || |   | ||| | ||||||||||| || |||||||| ||||||||||| ||| | ||||| || | ||||||||| || || |   | |  | |                                                                                
--------------------------------------------GTGTCTGGCCAAGCATCAAGGAAGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATTTTTTATACCTGTGGTGAAGATGGATTAGTGCAGCGTgtgagtcattcatttctttcctactttttttgttattttatttattgtttatcctctcactaagtgttttcttttgacag