Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTACCAATGTTGGCGACATTGGATTGTGGGATGTTGGTACCAAAGACAGACTCGTTgtaaggaacttcaaagcctaggacctcagtaaatgtacaatgattctccaggtttgtttgttgcactatgtgtttcaagcacttgttatattctattagccttcatataacacataataaattgatcaacattcaacag

Basic information

species Zea mays
transcript AC203920.3_FGT004
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC203920.3_FGT004 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g14980.2 (Oryza sativa), 5'ss of exon 9
TTGGTACCAATGTTGGCGACATTGGATTGTGGGATGTTGGTACCAAAGACAGACTCGTTgtaaggaacttcaaagcctaggacctcagtaaatgtacaatgattctccaggtttgtttgttgcactatgtgtttcaagcacttgttatattctattagccttcatataaca-----cataataaattgatcaacattcaacag
          |||||| ||||||||||| |||||||| |||||||| ||  |||| ||| |||| |||||||| |  | ||| || |  |||||  |||||   ||||||||||||  |||  |||||||  ||  ||   |||||    | |||||||||  || ||||      |||   ||||||   |   ||||| ||
----------TGTTGGTGACATTGGATTATGGGATGTCGGTACCAAGGAACGACTTGTTTTAAGAAACTTCAAGGTTTGGGATCTTACAAAATGCTCAATGGCCCTCCAGgtttgtccgttatactatgttatttgagtttttgttgctctttattagcctcaatctaactatgaccatgtaaaattgtaaattcttcaatag