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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCATGTTTTACTGTACCAGACCTCCAGTTGTCACCAAAAACATAAAATTGCATTTGTATGTGATACAGgtaaataacagcattctagatgatgaagaccaaggtgacgtgataggggagtacacacctgatgttcttgttactgaatttgtgagtatgcctctgtttgcttctacttactaggatgctattcctcacgtttgtttaactaattggacctataacatcctgcag

Basic information

species Zea mays
transcript AC199705.3_FGT008
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC199705.3_FGT008 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g43030.1 (Oryza sativa), 5'ss of exon 15
GTATCCATGTTTTACTGTACCAGACCTCCAGTTGTCACCAAAAACATAAAATTGCATTTGTATGTGATACAGgtaaataacagcattctagatgatgaagaccaaggtgacgtgataggggagtacacacctgatgttcttgttactgaatttgtgagtatgcctctgtttgcttctacttactaggatgctattcctcacgtttgtttaactaattggacctataacatc----ctgcag------------
                                                                        ||| || |    | | ||||||||||||      ||||    |||||||||||||| |||||||||||||| | ||||||||||||| |         |   |  | ||    | |  || ||    |  |   ||    | |||      |||| ||      |  ||            
------------------------------------------------------------------------GTAGATGAGGAGACTATAGATGATGAAG------GTGATTCCATAGGGGAGTACACCCCTGATGTTCTTGTCAGTGAATTTgtgagtgtcttgtgaacttaatacatttgtctgtagactcttgactagctagattctcttgattctgatgataagatgaggattctagttttctaaaaat

upper sequence: AC199705.3_FGT008 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0077g00490.t01 (Vitis vinifera), 5'ss of exon 3
GTATCCATGTTTTACTGTACCAGACCTCCAGTTGTCACCAAAAACATAAAATTGCATTTGTATGTGATACAGgtaaataacagcattctagatgatgaagaccaaggtgacgtgataggggagtacacacctgatgttcttgttactgaatttgtgagtatgcctctgtttg--cttctacttactaggatgctattcctcacgtttgtttaactaattggacctataacatcctgcag-------------------
                                                                        | ||| |      || | |  ||||   |||||||||| ||||| || ||||  ||||||||||||||||||| |||||||||  || | | | | ||||  ||| | || | ||      ||||      | |    || |   || ||  ||| ||    |  |                    
------------------------------------------------------------------------GAAAACATGGAGCTTTTGGGAGATGGTTACCAAGGTGATGTGATTGGAGAGTCAACACCTGATGTTCTTGTTAATGAATTTgtatgt-ttcttgtctttgatcttttcctcattaa----ttattttcattgatataatagcatgtttgatatatcactatgtctatttatttatgtcacaccctg